Gene : AGO5 A. thaliana TAIR10
Primary Identifier:  ? AT2G27880 Defline:  (1 of 1) PTHR22891//PTHR22891:SF40 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C // PROTEIN ARGONAUTE 5
Genomic Order:  2073 Name:  ? AT2G27880
Secondary Identifier:  ? PAC:19639740
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27880 0.5kb upstream 0.5kb upstream 5907 true Chr2: 11870988-11876894 Arabidopsis thaliana
AT2G27880 0.5kb upstream 0.5kb upstream 500 false Chr2: 11870988-11871487 Arabidopsis thaliana
AT2G27880 0.5kb downstream 0.5kb downstream 5907 true Chr2: 11871488-11877394 Arabidopsis thaliana
AT2G27880 0.5kb downstream 0.5kb downstream 500 false Chr2: 11876895-11877394 Arabidopsis thaliana
AT2G27880 1.0kb upstream 1.0kb upstream 6407 true Chr2: 11870488-11876894 Arabidopsis thaliana
AT2G27880 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11870488-11871487 Arabidopsis thaliana
AT2G27880 1.0kb downstream 1.0kb downstream 6407 true Chr2: 11871488-11877894 Arabidopsis thaliana
AT2G27880 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11876895-11877894 Arabidopsis thaliana
AT2G27880 2.0kb upstream 2.0kb upstream 7407 true Chr2: 11869488-11876894 Arabidopsis thaliana
AT2G27880 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11869488-11871487 Arabidopsis thaliana
AT2G27880 2.0kb downstream 2.0kb downstream 7407 true Chr2: 11871488-11878894 Arabidopsis thaliana
AT2G27880 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11876895-11878894 Arabidopsis thaliana
AT2G27880 5.0kb upstream 5.0kb upstream 10407 true Chr2: 11866488-11876894 Arabidopsis thaliana
AT2G27880 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11866488-11871487 Arabidopsis thaliana
AT2G27880 5.0kb downstream 5.0kb downstream 10407 true Chr2: 11871488-11881894 Arabidopsis thaliana
AT2G27880 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11876895-11881894 Arabidopsis thaliana
AT2G27880 10.0kb upstream 10.0kb upstream 15407 true Chr2: 11861488-11876894 Arabidopsis thaliana
AT2G27880 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11861488-11871487 Arabidopsis thaliana
AT2G27880 10.0kb downstream 10.0kb downstream 15407 true Chr2: 11871488-11886894 Arabidopsis thaliana
AT2G27880 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11876895-11886894 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029598 5273 Angiosperm View MSA
122374666 5261 Brassicaceae View MSA
123829535 5264 Brassicales-Malvales View MSA
124340792 5266 SBM View MSA
124241334 5268 Malvidae View MSA
124068081 5270 Rosid View MSA
123740580 5271 Pentapetalae View MSA
122786970 5272 Eudicot View MSA
121350103 5274 Embryophyte View MSA
123428465 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.094     Low High
cufflinks 0.034     Low  
cufflinks 0.026     Low  
cufflinks 0.033     Low  
cufflinks 0.03     Low  
cufflinks 0.032     Low  

0 Strain