Gene : AT2G27080 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31852:SF0 - LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN Genomic Order:  1989
Name:  ? AT2G27080 Secondary Identifier:  ? PAC:19639474
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G27080 0.5kb upstream 0.5kb upstream 4072 true Chr2: 11563433-11567504 Arabidopsis thaliana
AT2G27080 0.5kb upstream 0.5kb upstream 500 false Chr2: 11563433-11563932 Arabidopsis thaliana
AT2G27080 0.5kb downstream 0.5kb downstream 4072 true Chr2: 11563933-11568004 Arabidopsis thaliana
AT2G27080 0.5kb downstream 0.5kb downstream 500 false Chr2: 11567505-11568004 Arabidopsis thaliana
AT2G27080 1.0kb upstream 1.0kb upstream 4572 true Chr2: 11562933-11567504 Arabidopsis thaliana
AT2G27080 1.0kb upstream 1.0kb upstream 1000 false Chr2: 11562933-11563932 Arabidopsis thaliana
AT2G27080 1.0kb downstream 1.0kb downstream 4572 true Chr2: 11563933-11568504 Arabidopsis thaliana
AT2G27080 1.0kb downstream 1.0kb downstream 1000 false Chr2: 11567505-11568504 Arabidopsis thaliana
AT2G27080 2.0kb upstream 2.0kb upstream 5572 true Chr2: 11561933-11567504 Arabidopsis thaliana
AT2G27080 2.0kb upstream 2.0kb upstream 2000 false Chr2: 11561933-11563932 Arabidopsis thaliana
AT2G27080 2.0kb downstream 2.0kb downstream 5572 true Chr2: 11563933-11569504 Arabidopsis thaliana
AT2G27080 2.0kb downstream 2.0kb downstream 2000 false Chr2: 11567505-11569504 Arabidopsis thaliana
AT2G27080 5.0kb upstream 5.0kb upstream 8572 true Chr2: 11558933-11567504 Arabidopsis thaliana
AT2G27080 5.0kb upstream 5.0kb upstream 5000 false Chr2: 11558933-11563932 Arabidopsis thaliana
AT2G27080 5.0kb downstream 5.0kb downstream 8572 true Chr2: 11563933-11572504 Arabidopsis thaliana
AT2G27080 5.0kb downstream 5.0kb downstream 5000 false Chr2: 11567505-11572504 Arabidopsis thaliana
AT2G27080 10.0kb upstream 10.0kb upstream 13572 true Chr2: 11553933-11567504 Arabidopsis thaliana
AT2G27080 10.0kb upstream 10.0kb upstream 10000 false Chr2: 11553933-11563932 Arabidopsis thaliana
AT2G27080 10.0kb downstream 10.0kb downstream 13572 true Chr2: 11563933-11577504 Arabidopsis thaliana
AT2G27080 10.0kb downstream 10.0kb downstream 10000 false Chr2: 11567505-11577504 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365014 5261 Brassicaceae View MSA
123835928 5264 Brassicales-Malvales View MSA
124343458 5266 SBM View MSA
124240139 5268 Malvidae View MSA
124061418 5270 Rosid View MSA
123742078 5271 Pentapetalae View MSA
122788444 5272 Eudicot View MSA
122042676 5273 Angiosperm View MSA
121351108 5274 Embryophyte View MSA
123382008 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.402        
cufflinks 100.391     High  
cufflinks 4.866        
cufflinks 62.512     High  
cufflinks 1.111       Low
cufflinks 102.262     High  

0 Strain