Gene : AT2G16900 A. thaliana TAIR10
Defline:  (1 of 6) PTHR21704//PTHR21704:SF19 - NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED // EXPRESSED PROTEIN-RELATED Genomic Order:  914
Name:  ? AT2G16900 Secondary Identifier:  ? PAC:19640652
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G16900 0.5kb upstream 0.5kb upstream 3107 true Chr2: 7323615-7326721 Arabidopsis thaliana
AT2G16900 0.5kb upstream 0.5kb upstream 500 false Chr2: 7326222-7326721 Arabidopsis thaliana
AT2G16900 0.5kb downstream 0.5kb downstream 3107 true Chr2: 7323115-7326221 Arabidopsis thaliana
AT2G16900 0.5kb downstream 0.5kb downstream 500 false Chr2: 7323115-7323614 Arabidopsis thaliana
AT2G16900 1.0kb upstream 1.0kb upstream 3607 true Chr2: 7323615-7327221 Arabidopsis thaliana
AT2G16900 1.0kb upstream 1.0kb upstream 1000 false Chr2: 7326222-7327221 Arabidopsis thaliana
AT2G16900 1.0kb downstream 1.0kb downstream 3607 true Chr2: 7322615-7326221 Arabidopsis thaliana
AT2G16900 1.0kb downstream 1.0kb downstream 1000 false Chr2: 7322615-7323614 Arabidopsis thaliana
AT2G16900 2.0kb upstream 2.0kb upstream 4607 true Chr2: 7323615-7328221 Arabidopsis thaliana
AT2G16900 2.0kb upstream 2.0kb upstream 2000 false Chr2: 7326222-7328221 Arabidopsis thaliana
AT2G16900 2.0kb downstream 2.0kb downstream 4607 true Chr2: 7321615-7326221 Arabidopsis thaliana
AT2G16900 2.0kb downstream 2.0kb downstream 2000 false Chr2: 7321615-7323614 Arabidopsis thaliana
AT2G16900 5.0kb upstream 5.0kb upstream 7607 true Chr2: 7323615-7331221 Arabidopsis thaliana
AT2G16900 5.0kb upstream 5.0kb upstream 5000 false Chr2: 7326222-7331221 Arabidopsis thaliana
AT2G16900 5.0kb downstream 5.0kb downstream 7607 true Chr2: 7318615-7326221 Arabidopsis thaliana
AT2G16900 5.0kb downstream 5.0kb downstream 5000 false Chr2: 7318615-7323614 Arabidopsis thaliana
AT2G16900 10.0kb upstream 10.0kb upstream 12607 true Chr2: 7323615-7336221 Arabidopsis thaliana
AT2G16900 10.0kb upstream 10.0kb upstream 10000 false Chr2: 7326222-7336221 Arabidopsis thaliana
AT2G16900 10.0kb downstream 10.0kb downstream 12607 true Chr2: 7313615-7326221 Arabidopsis thaliana
AT2G16900 10.0kb downstream 10.0kb downstream 10000 false Chr2: 7313615-7323614 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366197 5261 Brassicaceae View MSA
123837321 5264 Brassicales-Malvales View MSA
124343473 5266 SBM View MSA
124245139 5268 Malvidae View MSA
124050567 5270 Rosid View MSA
123751665 5271 Pentapetalae View MSA
122793321 5272 Eudicot View MSA
122042349 5273 Angiosperm View MSA
121309949 5274 Embryophyte View MSA
123426721 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.681        
cufflinks 7.702        
cufflinks 2.805       Low
cufflinks 6.872        
cufflinks 2.943       Low
cufflinks 7.509        

0 Strain