Gene : COR413-PM1 A. thaliana TAIR10
Primary Identifier:  ? AT2G15970 Defline:  (1 of 4) PTHR33596//PTHR33596:SF1 - FAMILY NOT NAMED // COLD-REGULATED 413 PLASMA MEMBRANE PROTEIN 1-RELATED
Genomic Order:  832 Name:  ? AT2G15970
Secondary Identifier:  ? PAC:19641944
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Genomics

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Expression

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G15970 0.5kb upstream 0.5kb upstream 1652 true Chr2: 6949541-6951192 Arabidopsis thaliana
AT2G15970 0.5kb upstream 0.5kb upstream 500 false Chr2: 6949541-6950040 Arabidopsis thaliana
AT2G15970 0.5kb downstream 0.5kb downstream 1652 true Chr2: 6950041-6951692 Arabidopsis thaliana
AT2G15970 0.5kb downstream 0.5kb downstream 500 false Chr2: 6951193-6951692 Arabidopsis thaliana
AT2G15970 1.0kb upstream 1.0kb upstream 2152 true Chr2: 6949041-6951192 Arabidopsis thaliana
AT2G15970 1.0kb upstream 1.0kb upstream 1000 false Chr2: 6949041-6950040 Arabidopsis thaliana
AT2G15970 1.0kb downstream 1.0kb downstream 2152 true Chr2: 6950041-6952192 Arabidopsis thaliana
AT2G15970 1.0kb downstream 1.0kb downstream 1000 false Chr2: 6951193-6952192 Arabidopsis thaliana
AT2G15970 2.0kb upstream 2.0kb upstream 3152 true Chr2: 6948041-6951192 Arabidopsis thaliana
AT2G15970 2.0kb upstream 2.0kb upstream 2000 false Chr2: 6948041-6950040 Arabidopsis thaliana
AT2G15970 2.0kb downstream 2.0kb downstream 3152 true Chr2: 6950041-6953192 Arabidopsis thaliana
AT2G15970 2.0kb downstream 2.0kb downstream 2000 false Chr2: 6951193-6953192 Arabidopsis thaliana
AT2G15970 5.0kb upstream 5.0kb upstream 6152 true Chr2: 6945041-6951192 Arabidopsis thaliana
AT2G15970 5.0kb upstream 5.0kb upstream 5000 false Chr2: 6945041-6950040 Arabidopsis thaliana
AT2G15970 5.0kb downstream 5.0kb downstream 6152 true Chr2: 6950041-6956192 Arabidopsis thaliana
AT2G15970 5.0kb downstream 5.0kb downstream 5000 false Chr2: 6951193-6956192 Arabidopsis thaliana
AT2G15970 10.0kb upstream 10.0kb upstream 11152 true Chr2: 6940041-6951192 Arabidopsis thaliana
AT2G15970 10.0kb upstream 10.0kb upstream 10000 false Chr2: 6940041-6950040 Arabidopsis thaliana
AT2G15970 10.0kb downstream 10.0kb downstream 11152 true Chr2: 6950041-6961192 Arabidopsis thaliana
AT2G15970 10.0kb downstream 10.0kb downstream 10000 false Chr2: 6951193-6961192 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379206 5261 Brassicaceae View MSA
123840703 5264 Brassicales-Malvales View MSA
124348627 5266 SBM View MSA
124246161 5268 Malvidae View MSA
124069489 5270 Rosid View MSA
123743524 5271 Pentapetalae View MSA
122795591 5272 Eudicot View MSA
122043105 5273 Angiosperm View MSA
121346555 5274 Embryophyte View MSA
123380405 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 149.063     High  
cufflinks 79.877     High Low
cufflinks 208.145     High  
cufflinks 124.459     High  
cufflinks 240.663     High High
cufflinks 88.822     High  

0 Strain