Gene : AT2G15880 A. thaliana TAIR10
Defline:  (1 of 164) PF00560 - Leucine Rich Repeat (LRR_1) Genomic Order:  826
Name:  ? AT2G15880 Secondary Identifier:  ? PAC:19642457
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G15880 0.5kb upstream 0.5kb upstream 2781 true Chr2: 6918039-6920819 Arabidopsis thaliana
AT2G15880 0.5kb upstream 0.5kb upstream 500 false Chr2: 6920320-6920819 Arabidopsis thaliana
AT2G15880 0.5kb downstream 0.5kb downstream 2781 true Chr2: 6917539-6920319 Arabidopsis thaliana
AT2G15880 0.5kb downstream 0.5kb downstream 500 false Chr2: 6917539-6918038 Arabidopsis thaliana
AT2G15880 1.0kb upstream 1.0kb upstream 3281 true Chr2: 6918039-6921319 Arabidopsis thaliana
AT2G15880 1.0kb upstream 1.0kb upstream 1000 false Chr2: 6920320-6921319 Arabidopsis thaliana
AT2G15880 1.0kb downstream 1.0kb downstream 3281 true Chr2: 6917039-6920319 Arabidopsis thaliana
AT2G15880 1.0kb downstream 1.0kb downstream 1000 false Chr2: 6917039-6918038 Arabidopsis thaliana
AT2G15880 2.0kb upstream 2.0kb upstream 4281 true Chr2: 6918039-6922319 Arabidopsis thaliana
AT2G15880 2.0kb upstream 2.0kb upstream 2000 false Chr2: 6920320-6922319 Arabidopsis thaliana
AT2G15880 2.0kb downstream 2.0kb downstream 4281 true Chr2: 6916039-6920319 Arabidopsis thaliana
AT2G15880 2.0kb downstream 2.0kb downstream 2000 false Chr2: 6916039-6918038 Arabidopsis thaliana
AT2G15880 5.0kb upstream 5.0kb upstream 7281 true Chr2: 6918039-6925319 Arabidopsis thaliana
AT2G15880 5.0kb upstream 5.0kb upstream 5000 false Chr2: 6920320-6925319 Arabidopsis thaliana
AT2G15880 5.0kb downstream 5.0kb downstream 7281 true Chr2: 6913039-6920319 Arabidopsis thaliana
AT2G15880 5.0kb downstream 5.0kb downstream 5000 false Chr2: 6913039-6918038 Arabidopsis thaliana
AT2G15880 10.0kb upstream 10.0kb upstream 12281 true Chr2: 6918039-6930319 Arabidopsis thaliana
AT2G15880 10.0kb upstream 10.0kb upstream 10000 false Chr2: 6920320-6930319 Arabidopsis thaliana
AT2G15880 10.0kb downstream 10.0kb downstream 12281 true Chr2: 6908039-6920319 Arabidopsis thaliana
AT2G15880 10.0kb downstream 10.0kb downstream 10000 false Chr2: 6908039-6918038 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343861 5261 Brassicaceae View MSA
123841495 5264 Brassicales-Malvales View MSA
124351661 5266 SBM View MSA
124254554 5268 Malvidae View MSA
124074520 5270 Rosid View MSA
123751287 5271 Pentapetalae View MSA
122794768 5272 Eudicot View MSA
122048760 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121349764 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.44       Low
cufflinks 4.671        
cufflinks 3.726        
cufflinks 9.525       High
cufflinks 5.093        
cufflinks 2.47       Low

0 Strain