Gene : AT2G13770 A. thaliana TAIR10
Defline:  (1 of 2) PF04827 - Plant transposon protein (Plant_tran) Genomic Order:  682
Name:  ? AT2G13770 Secondary Identifier:  ? PAC:19641070
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G13770 0.5kb upstream 0.5kb upstream 1778 true Chr2: 5736070-5737847 Arabidopsis thaliana
AT2G13770 0.5kb upstream 0.5kb upstream 500 false Chr2: 5736070-5736569 Arabidopsis thaliana
AT2G13770 0.5kb downstream 0.5kb downstream 1778 true Chr2: 5736570-5738347 Arabidopsis thaliana
AT2G13770 0.5kb downstream 0.5kb downstream 500 false Chr2: 5737848-5738347 Arabidopsis thaliana
AT2G13770 1.0kb upstream 1.0kb upstream 2278 true Chr2: 5735570-5737847 Arabidopsis thaliana
AT2G13770 1.0kb upstream 1.0kb upstream 1000 false Chr2: 5735570-5736569 Arabidopsis thaliana
AT2G13770 1.0kb downstream 1.0kb downstream 2278 true Chr2: 5736570-5738847 Arabidopsis thaliana
AT2G13770 1.0kb downstream 1.0kb downstream 1000 false Chr2: 5737848-5738847 Arabidopsis thaliana
AT2G13770 2.0kb upstream 2.0kb upstream 3278 true Chr2: 5734570-5737847 Arabidopsis thaliana
AT2G13770 2.0kb upstream 2.0kb upstream 2000 false Chr2: 5734570-5736569 Arabidopsis thaliana
AT2G13770 2.0kb downstream 2.0kb downstream 3278 true Chr2: 5736570-5739847 Arabidopsis thaliana
AT2G13770 2.0kb downstream 2.0kb downstream 2000 false Chr2: 5737848-5739847 Arabidopsis thaliana
AT2G13770 5.0kb upstream 5.0kb upstream 6278 true Chr2: 5731570-5737847 Arabidopsis thaliana
AT2G13770 5.0kb upstream 5.0kb upstream 5000 false Chr2: 5731570-5736569 Arabidopsis thaliana
AT2G13770 5.0kb downstream 5.0kb downstream 6278 true Chr2: 5736570-5742847 Arabidopsis thaliana
AT2G13770 5.0kb downstream 5.0kb downstream 5000 false Chr2: 5737848-5742847 Arabidopsis thaliana
AT2G13770 10.0kb upstream 10.0kb upstream 11278 true Chr2: 5726570-5737847 Arabidopsis thaliana
AT2G13770 10.0kb upstream 10.0kb upstream 10000 false Chr2: 5726570-5736569 Arabidopsis thaliana
AT2G13770 10.0kb downstream 10.0kb downstream 11278 true Chr2: 5736570-5747847 Arabidopsis thaliana
AT2G13770 10.0kb downstream 10.0kb downstream 10000 false Chr2: 5737848-5747847 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121782286 5273 Angiosperm View MSA
122329401 5261 Brassicaceae Singleton cluster - no MSA
123770708 5264 Brassicales-Malvales Singleton cluster - no MSA
124269246 5266 SBM Singleton cluster - no MSA
124125398 5268 Malvidae Singleton cluster - no MSA
124038017 5270 Rosid View MSA
123752417 5271 Pentapetalae View MSA
122774544 5272 Eudicot View MSA
121351284 5274 Embryophyte View MSA
123382098 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.112     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.03     Low Low
cufflinks 0.085     Low  

0 Strain