Gene : AT2G12400 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31414:SF1 - TRANSMEMBRANE PROTEIN DDB_G0292058 Genomic Order:  627
Name:  ? AT2G12400 Secondary Identifier:  ? PAC:19638468
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G12400 0.5kb upstream 0.5kb upstream 3880 true Chr2: 5004943-5008822 Arabidopsis thaliana
AT2G12400 0.5kb upstream 0.5kb upstream 500 false Chr2: 5008323-5008822 Arabidopsis thaliana
AT2G12400 0.5kb downstream 0.5kb downstream 3880 true Chr2: 5004443-5008322 Arabidopsis thaliana
AT2G12400 0.5kb downstream 0.5kb downstream 500 false Chr2: 5004443-5004942 Arabidopsis thaliana
AT2G12400 1.0kb upstream 1.0kb upstream 4380 true Chr2: 5004943-5009322 Arabidopsis thaliana
AT2G12400 1.0kb upstream 1.0kb upstream 1000 false Chr2: 5008323-5009322 Arabidopsis thaliana
AT2G12400 1.0kb downstream 1.0kb downstream 4380 true Chr2: 5003943-5008322 Arabidopsis thaliana
AT2G12400 1.0kb downstream 1.0kb downstream 1000 false Chr2: 5003943-5004942 Arabidopsis thaliana
AT2G12400 2.0kb upstream 2.0kb upstream 5380 true Chr2: 5004943-5010322 Arabidopsis thaliana
AT2G12400 2.0kb upstream 2.0kb upstream 2000 false Chr2: 5008323-5010322 Arabidopsis thaliana
AT2G12400 2.0kb downstream 2.0kb downstream 5380 true Chr2: 5002943-5008322 Arabidopsis thaliana
AT2G12400 2.0kb downstream 2.0kb downstream 2000 false Chr2: 5002943-5004942 Arabidopsis thaliana
AT2G12400 5.0kb upstream 5.0kb upstream 8380 true Chr2: 5004943-5013322 Arabidopsis thaliana
AT2G12400 5.0kb upstream 5.0kb upstream 5000 false Chr2: 5008323-5013322 Arabidopsis thaliana
AT2G12400 5.0kb downstream 5.0kb downstream 8380 true Chr2: 4999943-5008322 Arabidopsis thaliana
AT2G12400 5.0kb downstream 5.0kb downstream 5000 false Chr2: 4999943-5004942 Arabidopsis thaliana
AT2G12400 10.0kb upstream 10.0kb upstream 13380 true Chr2: 5004943-5018322 Arabidopsis thaliana
AT2G12400 10.0kb upstream 10.0kb upstream 10000 false Chr2: 5008323-5018322 Arabidopsis thaliana
AT2G12400 10.0kb downstream 10.0kb downstream 13380 true Chr2: 4994943-5008322 Arabidopsis thaliana
AT2G12400 10.0kb downstream 10.0kb downstream 10000 false Chr2: 4994943-5004942 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378583 5261 Brassicaceae View MSA
123839550 5264 Brassicales-Malvales View MSA
124344666 5266 SBM View MSA
124246122 5268 Malvidae View MSA
124069186 5270 Rosid View MSA
123747530 5271 Pentapetalae View MSA
122793265 5272 Eudicot View MSA
122043467 5273 Angiosperm View MSA
123429125 5275 Viridiplantae View MSA
121350323 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.797        
cufflinks 77.392     High High
cufflinks 4.686       Low
cufflinks 53.488     High  
cufflinks 6.133        
cufflinks 62.615     High  

0 Strain