Gene : OPR3 A. thaliana TAIR10

Primary Identifier:  ? AT2G06050 Defline:  (1 of 1) PTHR22893//PTHR22893:SF67 - NADH OXIDOREDUCTASE-RELATED // 12-OXOPHYTODIENOATE REDUCTASE 3
Genomic Order:  454 Name:  ? AT2G06050
Secondary Identifier:  ? PAC:19638169

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-735 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G06050 0.5kb upstream 0.5kb upstream 3689 true Chr2: 2359114-2362802 Arabidopsis thaliana
AT2G06050 0.5kb upstream 0.5kb upstream 500 false Chr2: 2362303-2362802 Arabidopsis thaliana
AT2G06050 0.5kb downstream 0.5kb downstream 3689 true Chr2: 2358614-2362302 Arabidopsis thaliana
AT2G06050 0.5kb downstream 0.5kb downstream 500 false Chr2: 2358614-2359113 Arabidopsis thaliana
AT2G06050 1.0kb upstream 1.0kb upstream 4189 true Chr2: 2359114-2363302 Arabidopsis thaliana
AT2G06050 1.0kb upstream 1.0kb upstream 1000 false Chr2: 2362303-2363302 Arabidopsis thaliana
AT2G06050 1.0kb downstream 1.0kb downstream 4189 true Chr2: 2358114-2362302 Arabidopsis thaliana
AT2G06050 1.0kb downstream 1.0kb downstream 1000 false Chr2: 2358114-2359113 Arabidopsis thaliana
AT2G06050 2.0kb upstream 2.0kb upstream 5189 true Chr2: 2359114-2364302 Arabidopsis thaliana
AT2G06050 2.0kb upstream 2.0kb upstream 2000 false Chr2: 2362303-2364302 Arabidopsis thaliana
AT2G06050 2.0kb downstream 2.0kb downstream 5189 true Chr2: 2357114-2362302 Arabidopsis thaliana
AT2G06050 2.0kb downstream 2.0kb downstream 2000 false Chr2: 2357114-2359113 Arabidopsis thaliana
AT2G06050 5.0kb upstream 5.0kb upstream 8189 true Chr2: 2359114-2367302 Arabidopsis thaliana
AT2G06050 5.0kb upstream 5.0kb upstream 5000 false Chr2: 2362303-2367302 Arabidopsis thaliana
AT2G06050 5.0kb downstream 5.0kb downstream 8189 true Chr2: 2354114-2362302 Arabidopsis thaliana
AT2G06050 5.0kb downstream 5.0kb downstream 5000 false Chr2: 2354114-2359113 Arabidopsis thaliana
AT2G06050 10.0kb upstream 10.0kb upstream 13189 true Chr2: 2359114-2372302 Arabidopsis thaliana
AT2G06050 10.0kb upstream 10.0kb upstream 10000 false Chr2: 2362303-2372302 Arabidopsis thaliana
AT2G06050 10.0kb downstream 10.0kb downstream 13189 true Chr2: 2349114-2362302 Arabidopsis thaliana
AT2G06050 10.0kb downstream 10.0kb downstream 10000 false Chr2: 2349114-2359113 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365075 5261 Brassicaceae View MSA
123829939 5264 Brassicales-Malvales View MSA
124321640 5266 SBM View MSA
124251945 5268 Malvidae View MSA
124067438 5270 Rosid View MSA
123752843 5271 Pentapetalae View MSA
122793200 5272 Eudicot View MSA
122045758 5273 Angiosperm View MSA
121351640 5274 Embryophyte View MSA
123428487 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.977       Low
cufflinks 54.912     High  
cufflinks 45.208     High  
cufflinks 54.777     High  
cufflinks 44.71     High  
cufflinks 46.425     High  

0 Strain