Gene : AT2G05830 A. thaliana TAIR10
Defline:  (1 of 1) 5.3.1.23 - S-methyl-5-thioribose-1-phosphate isomerase / S-methyl-5-thio-D-ribose-1-phosphate aldose-ketose-isomerase Genomic Order:  438
Name:  ? AT2G05830 Secondary Identifier:  ? PAC:19639929
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-4361 Arabidopsis thaliana pathologic  
Athaliana PWY-7270 Arabidopsis thaliana pathologic  
Athaliana PWY-7528 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G05830 0.5kb upstream 0.5kb upstream 3005 true Chr2: 2229102-2232106 Arabidopsis thaliana
AT2G05830 0.5kb upstream 0.5kb upstream 500 false Chr2: 2229102-2229601 Arabidopsis thaliana
AT2G05830 0.5kb downstream 0.5kb downstream 3005 true Chr2: 2229602-2232606 Arabidopsis thaliana
AT2G05830 0.5kb downstream 0.5kb downstream 500 false Chr2: 2232107-2232606 Arabidopsis thaliana
AT2G05830 1.0kb upstream 1.0kb upstream 3505 true Chr2: 2228602-2232106 Arabidopsis thaliana
AT2G05830 1.0kb upstream 1.0kb upstream 1000 false Chr2: 2228602-2229601 Arabidopsis thaliana
AT2G05830 1.0kb downstream 1.0kb downstream 3505 true Chr2: 2229602-2233106 Arabidopsis thaliana
AT2G05830 1.0kb downstream 1.0kb downstream 1000 false Chr2: 2232107-2233106 Arabidopsis thaliana
AT2G05830 2.0kb upstream 2.0kb upstream 4505 true Chr2: 2227602-2232106 Arabidopsis thaliana
AT2G05830 2.0kb upstream 2.0kb upstream 2000 false Chr2: 2227602-2229601 Arabidopsis thaliana
AT2G05830 2.0kb downstream 2.0kb downstream 4505 true Chr2: 2229602-2234106 Arabidopsis thaliana
AT2G05830 2.0kb downstream 2.0kb downstream 2000 false Chr2: 2232107-2234106 Arabidopsis thaliana
AT2G05830 5.0kb upstream 5.0kb upstream 7505 true Chr2: 2224602-2232106 Arabidopsis thaliana
AT2G05830 5.0kb upstream 5.0kb upstream 5000 false Chr2: 2224602-2229601 Arabidopsis thaliana
AT2G05830 5.0kb downstream 5.0kb downstream 7505 true Chr2: 2229602-2237106 Arabidopsis thaliana
AT2G05830 5.0kb downstream 5.0kb downstream 5000 false Chr2: 2232107-2237106 Arabidopsis thaliana
AT2G05830 10.0kb upstream 10.0kb upstream 12505 true Chr2: 2219602-2232106 Arabidopsis thaliana
AT2G05830 10.0kb upstream 10.0kb upstream 10000 false Chr2: 2219602-2229601 Arabidopsis thaliana
AT2G05830 10.0kb downstream 10.0kb downstream 12505 true Chr2: 2229602-2242106 Arabidopsis thaliana
AT2G05830 10.0kb downstream 10.0kb downstream 10000 false Chr2: 2232107-2242106 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360311 5261 Brassicaceae View MSA
123829438 5264 Brassicales-Malvales View MSA
124345905 5266 SBM View MSA
124238790 5268 Malvidae View MSA
124060423 5270 Rosid View MSA
123740094 5271 Pentapetalae View MSA
122788864 5272 Eudicot View MSA
122043863 5273 Angiosperm View MSA
121310201 5274 Embryophyte View MSA
123428305 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.292        
cufflinks 6.875       High
cufflinks 5.706        
cufflinks 5.798        
cufflinks 5.269        
cufflinks 6.154        

0 Strain