Gene : AT2G05540 A. thaliana TAIR10
Defline:  (1 of 6) PF07172 - Glycine rich protein family (GRP) Genomic Order:  418
Name:  ? AT2G05540 Secondary Identifier:  ? PAC:19642561
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G05540 0.5kb upstream 0.5kb upstream 1562 true Chr2: 2032656-2034217 Arabidopsis thaliana
AT2G05540 0.5kb upstream 0.5kb upstream 500 false Chr2: 2032656-2033155 Arabidopsis thaliana
AT2G05540 0.5kb downstream 0.5kb downstream 1562 true Chr2: 2033156-2034717 Arabidopsis thaliana
AT2G05540 0.5kb downstream 0.5kb downstream 500 false Chr2: 2034218-2034717 Arabidopsis thaliana
AT2G05540 1.0kb upstream 1.0kb upstream 2062 true Chr2: 2032156-2034217 Arabidopsis thaliana
AT2G05540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 2032156-2033155 Arabidopsis thaliana
AT2G05540 1.0kb downstream 1.0kb downstream 2062 true Chr2: 2033156-2035217 Arabidopsis thaliana
AT2G05540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 2034218-2035217 Arabidopsis thaliana
AT2G05540 2.0kb upstream 2.0kb upstream 3062 true Chr2: 2031156-2034217 Arabidopsis thaliana
AT2G05540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 2031156-2033155 Arabidopsis thaliana
AT2G05540 2.0kb downstream 2.0kb downstream 3062 true Chr2: 2033156-2036217 Arabidopsis thaliana
AT2G05540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 2034218-2036217 Arabidopsis thaliana
AT2G05540 5.0kb upstream 5.0kb upstream 6062 true Chr2: 2028156-2034217 Arabidopsis thaliana
AT2G05540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 2028156-2033155 Arabidopsis thaliana
AT2G05540 5.0kb downstream 5.0kb downstream 6062 true Chr2: 2033156-2039217 Arabidopsis thaliana
AT2G05540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 2034218-2039217 Arabidopsis thaliana
AT2G05540 10.0kb upstream 10.0kb upstream 11062 true Chr2: 2023156-2034217 Arabidopsis thaliana
AT2G05540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 2023156-2033155 Arabidopsis thaliana
AT2G05540 10.0kb downstream 10.0kb downstream 11062 true Chr2: 2033156-2044217 Arabidopsis thaliana
AT2G05540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 2034218-2044217 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379139 5261 Brassicaceae View MSA
123837571 5264 Brassicales-Malvales View MSA
124346130 5266 SBM View MSA
124249134 5268 Malvidae View MSA
124073083 5270 Rosid View MSA
123750228 5271 Pentapetalae View MSA
122798200 5272 Eudicot View MSA
122051270 5273 Angiosperm View MSA
121312387 5274 Embryophyte View MSA
123349563 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.333        
cufflinks 1.057        
cufflinks 15.839        
cufflinks 4.566        
cufflinks 13.334        
cufflinks 0.263     Low Low

0 Strain