Gene : AT2G04410 A. thaliana TAIR10
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  335
Name:  ? AT2G04410 Secondary Identifier:  ? PAC:19638719
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G04410 0.5kb upstream 0.5kb upstream 1922 true Chr2: 1533697-1535618 Arabidopsis thaliana
AT2G04410 0.5kb upstream 0.5kb upstream 500 false Chr2: 1535119-1535618 Arabidopsis thaliana
AT2G04410 0.5kb downstream 0.5kb downstream 1922 true Chr2: 1533197-1535118 Arabidopsis thaliana
AT2G04410 0.5kb downstream 0.5kb downstream 500 false Chr2: 1533197-1533696 Arabidopsis thaliana
AT2G04410 1.0kb upstream 1.0kb upstream 2422 true Chr2: 1533697-1536118 Arabidopsis thaliana
AT2G04410 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1535119-1536118 Arabidopsis thaliana
AT2G04410 1.0kb downstream 1.0kb downstream 2422 true Chr2: 1532697-1535118 Arabidopsis thaliana
AT2G04410 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1532697-1533696 Arabidopsis thaliana
AT2G04410 2.0kb upstream 2.0kb upstream 3422 true Chr2: 1533697-1537118 Arabidopsis thaliana
AT2G04410 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1535119-1537118 Arabidopsis thaliana
AT2G04410 2.0kb downstream 2.0kb downstream 3422 true Chr2: 1531697-1535118 Arabidopsis thaliana
AT2G04410 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1531697-1533696 Arabidopsis thaliana
AT2G04410 5.0kb upstream 5.0kb upstream 6422 true Chr2: 1533697-1540118 Arabidopsis thaliana
AT2G04410 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1535119-1540118 Arabidopsis thaliana
AT2G04410 5.0kb downstream 5.0kb downstream 6422 true Chr2: 1528697-1535118 Arabidopsis thaliana
AT2G04410 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1528697-1533696 Arabidopsis thaliana
AT2G04410 10.0kb upstream 10.0kb upstream 11422 true Chr2: 1533697-1545118 Arabidopsis thaliana
AT2G04410 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1535119-1545118 Arabidopsis thaliana
AT2G04410 10.0kb downstream 10.0kb downstream 11422 true Chr2: 1523697-1535118 Arabidopsis thaliana
AT2G04410 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1523697-1533696 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377012 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 47.584     High  
cufflinks 58.159     High High
cufflinks 44.219     High  
cufflinks 48.245     High  
cufflinks 41.474     High Low
cufflinks 50.378     High  

0 Strain