Gene : XERICO A. thaliana TAIR10
Primary Identifier:  ? AT2G04240 Defline:  (1 of 3) K16285 - RING/U-box domain-containing protein (XERICO)
Genomic Order:  321 Name:  ? AT2G04240
Secondary Identifier:  ? PAC:19642626
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G04240 0.5kb upstream 0.5kb upstream 1808 true Chr2: 1461630-1463437 Arabidopsis thaliana
AT2G04240 0.5kb upstream 0.5kb upstream 500 false Chr2: 1462938-1463437 Arabidopsis thaliana
AT2G04240 0.5kb downstream 0.5kb downstream 1808 true Chr2: 1461130-1462937 Arabidopsis thaliana
AT2G04240 0.5kb downstream 0.5kb downstream 500 false Chr2: 1461130-1461629 Arabidopsis thaliana
AT2G04240 1.0kb upstream 1.0kb upstream 2308 true Chr2: 1461630-1463937 Arabidopsis thaliana
AT2G04240 1.0kb upstream 1.0kb upstream 1000 false Chr2: 1462938-1463937 Arabidopsis thaliana
AT2G04240 1.0kb downstream 1.0kb downstream 2308 true Chr2: 1460630-1462937 Arabidopsis thaliana
AT2G04240 1.0kb downstream 1.0kb downstream 1000 false Chr2: 1460630-1461629 Arabidopsis thaliana
AT2G04240 2.0kb upstream 2.0kb upstream 3308 true Chr2: 1461630-1464937 Arabidopsis thaliana
AT2G04240 2.0kb upstream 2.0kb upstream 2000 false Chr2: 1462938-1464937 Arabidopsis thaliana
AT2G04240 2.0kb downstream 2.0kb downstream 3308 true Chr2: 1459630-1462937 Arabidopsis thaliana
AT2G04240 2.0kb downstream 2.0kb downstream 2000 false Chr2: 1459630-1461629 Arabidopsis thaliana
AT2G04240 5.0kb upstream 5.0kb upstream 6308 true Chr2: 1461630-1467937 Arabidopsis thaliana
AT2G04240 5.0kb upstream 5.0kb upstream 5000 false Chr2: 1462938-1467937 Arabidopsis thaliana
AT2G04240 5.0kb downstream 5.0kb downstream 6308 true Chr2: 1456630-1462937 Arabidopsis thaliana
AT2G04240 5.0kb downstream 5.0kb downstream 5000 false Chr2: 1456630-1461629 Arabidopsis thaliana
AT2G04240 10.0kb upstream 10.0kb upstream 11308 true Chr2: 1461630-1472937 Arabidopsis thaliana
AT2G04240 10.0kb upstream 10.0kb upstream 10000 false Chr2: 1462938-1472937 Arabidopsis thaliana
AT2G04240 10.0kb downstream 10.0kb downstream 11308 true Chr2: 1451630-1462937 Arabidopsis thaliana
AT2G04240 10.0kb downstream 10.0kb downstream 10000 false Chr2: 1451630-1461629 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361250 5261 Brassicaceae View MSA
123840883 5264 Brassicales-Malvales View MSA
124341869 5266 SBM View MSA
124253814 5268 Malvidae View MSA
124062810 5270 Rosid View MSA
123750154 5271 Pentapetalae View MSA
122792700 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.932        
cufflinks 7.134        
cufflinks 5.203       Low
cufflinks 9.082       High
cufflinks 6.167        
cufflinks 5.374        

0 Strain