Gene : MEF21 A. thaliana TAIR10
Primary Identifier:  ? AT2G20540 Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2)
Genomic Order:  1296 Name:  ? AT2G20540
Secondary Identifier:  ? PAC:19638921
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G20540 0.5kb upstream 0.5kb upstream 2105 true Chr2: 8843660-8845764 Arabidopsis thaliana
AT2G20540 0.5kb upstream 0.5kb upstream 500 false Chr2: 8843660-8844159 Arabidopsis thaliana
AT2G20540 0.5kb downstream 0.5kb downstream 2105 true Chr2: 8844160-8846264 Arabidopsis thaliana
AT2G20540 0.5kb downstream 0.5kb downstream 500 false Chr2: 8845765-8846264 Arabidopsis thaliana
AT2G20540 1.0kb upstream 1.0kb upstream 2605 true Chr2: 8843160-8845764 Arabidopsis thaliana
AT2G20540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8843160-8844159 Arabidopsis thaliana
AT2G20540 1.0kb downstream 1.0kb downstream 2605 true Chr2: 8844160-8846764 Arabidopsis thaliana
AT2G20540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8845765-8846764 Arabidopsis thaliana
AT2G20540 2.0kb upstream 2.0kb upstream 3605 true Chr2: 8842160-8845764 Arabidopsis thaliana
AT2G20540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8842160-8844159 Arabidopsis thaliana
AT2G20540 2.0kb downstream 2.0kb downstream 3605 true Chr2: 8844160-8847764 Arabidopsis thaliana
AT2G20540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8845765-8847764 Arabidopsis thaliana
AT2G20540 5.0kb upstream 5.0kb upstream 6605 true Chr2: 8839160-8845764 Arabidopsis thaliana
AT2G20540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8839160-8844159 Arabidopsis thaliana
AT2G20540 5.0kb downstream 5.0kb downstream 6605 true Chr2: 8844160-8850764 Arabidopsis thaliana
AT2G20540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8845765-8850764 Arabidopsis thaliana
AT2G20540 10.0kb upstream 10.0kb upstream 11605 true Chr2: 8834160-8845764 Arabidopsis thaliana
AT2G20540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8834160-8844159 Arabidopsis thaliana
AT2G20540 10.0kb downstream 10.0kb downstream 11605 true Chr2: 8844160-8855764 Arabidopsis thaliana
AT2G20540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8845765-8855764 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370537 5261 Brassicaceae View MSA
123839556 5264 Brassicales-Malvales View MSA
124344392 5266 SBM View MSA
124243300 5268 Malvidae View MSA
124072342 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.096        
cufflinks 1.055        
cufflinks 0.724       Low
cufflinks 1.141        
cufflinks 0.66       Low
cufflinks 1.012        

0 Strain