Gene : HA1 A. thaliana TAIR10
Primary Identifier:  ? AT2G18960 Defline:  (1 of 6) PTHR24093:SF355 - ATPASE 1, PLASMA MEMBRANE-TYPE-RELATED
Genomic Order:  1135 Name:  ? AT2G18960
Secondary Identifier:  ? PAC:19639793
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0 Pathways

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G18960 0.5kb upstream 0.5kb upstream 6492 true Chr2: 8221131-8227622 Arabidopsis thaliana
AT2G18960 0.5kb upstream 0.5kb upstream 500 false Chr2: 8221131-8221630 Arabidopsis thaliana
AT2G18960 0.5kb downstream 0.5kb downstream 6492 true Chr2: 8221631-8228122 Arabidopsis thaliana
AT2G18960 0.5kb downstream 0.5kb downstream 500 false Chr2: 8227623-8228122 Arabidopsis thaliana
AT2G18960 1.0kb upstream 1.0kb upstream 6992 true Chr2: 8220631-8227622 Arabidopsis thaliana
AT2G18960 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8220631-8221630 Arabidopsis thaliana
AT2G18960 1.0kb downstream 1.0kb downstream 6992 true Chr2: 8221631-8228622 Arabidopsis thaliana
AT2G18960 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8227623-8228622 Arabidopsis thaliana
AT2G18960 2.0kb upstream 2.0kb upstream 7992 true Chr2: 8219631-8227622 Arabidopsis thaliana
AT2G18960 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8219631-8221630 Arabidopsis thaliana
AT2G18960 2.0kb downstream 2.0kb downstream 7992 true Chr2: 8221631-8229622 Arabidopsis thaliana
AT2G18960 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8227623-8229622 Arabidopsis thaliana
AT2G18960 5.0kb upstream 5.0kb upstream 10992 true Chr2: 8216631-8227622 Arabidopsis thaliana
AT2G18960 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8216631-8221630 Arabidopsis thaliana
AT2G18960 5.0kb downstream 5.0kb downstream 10992 true Chr2: 8221631-8232622 Arabidopsis thaliana
AT2G18960 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8227623-8232622 Arabidopsis thaliana
AT2G18960 10.0kb upstream 10.0kb upstream 15992 true Chr2: 8211631-8227622 Arabidopsis thaliana
AT2G18960 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8211631-8221630 Arabidopsis thaliana
AT2G18960 10.0kb downstream 10.0kb downstream 15992 true Chr2: 8221631-8237622 Arabidopsis thaliana
AT2G18960 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8227623-8237622 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376939 5261 Brassicaceae View MSA
123836725 5264 Brassicales-Malvales View MSA
124339831 5266 SBM View MSA
124242213 5268 Malvidae View MSA
124073310 5270 Rosid View MSA
123751017 5271 Pentapetalae View MSA
122796712 5272 Eudicot View MSA
122050656 5273 Angiosperm View MSA
121349531 5274 Embryophyte View MSA
123428375 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 190.391     High High
cufflinks 135.55     High  
cufflinks 139.316     High  
cufflinks 157.976     High  
cufflinks 125.704     High  
cufflinks 121.524     High  

0 Strain