Gene : AT2G18940 A. thaliana TAIR10
Defline:  (1 of 3) K17710 - pentatricopeptide repeat domain-containing protein 1 (PTCD1) Genomic Order:  1133
Name:  ? AT2G18940 Secondary Identifier:  ? PAC:19641687
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G18940 0.5kb upstream 0.5kb upstream 3166 true Chr2: 8203730-8206895 Arabidopsis thaliana
AT2G18940 0.5kb upstream 0.5kb upstream 500 false Chr2: 8206396-8206895 Arabidopsis thaliana
AT2G18940 0.5kb downstream 0.5kb downstream 3166 true Chr2: 8203230-8206395 Arabidopsis thaliana
AT2G18940 0.5kb downstream 0.5kb downstream 500 false Chr2: 8203230-8203729 Arabidopsis thaliana
AT2G18940 1.0kb upstream 1.0kb upstream 3666 true Chr2: 8203730-8207395 Arabidopsis thaliana
AT2G18940 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8206396-8207395 Arabidopsis thaliana
AT2G18940 1.0kb downstream 1.0kb downstream 3666 true Chr2: 8202730-8206395 Arabidopsis thaliana
AT2G18940 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8202730-8203729 Arabidopsis thaliana
AT2G18940 2.0kb upstream 2.0kb upstream 4666 true Chr2: 8203730-8208395 Arabidopsis thaliana
AT2G18940 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8206396-8208395 Arabidopsis thaliana
AT2G18940 2.0kb downstream 2.0kb downstream 4666 true Chr2: 8201730-8206395 Arabidopsis thaliana
AT2G18940 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8201730-8203729 Arabidopsis thaliana
AT2G18940 5.0kb upstream 5.0kb upstream 7666 true Chr2: 8203730-8211395 Arabidopsis thaliana
AT2G18940 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8206396-8211395 Arabidopsis thaliana
AT2G18940 5.0kb downstream 5.0kb downstream 7666 true Chr2: 8198730-8206395 Arabidopsis thaliana
AT2G18940 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8198730-8203729 Arabidopsis thaliana
AT2G18940 10.0kb upstream 10.0kb upstream 12666 true Chr2: 8203730-8216395 Arabidopsis thaliana
AT2G18940 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8206396-8216395 Arabidopsis thaliana
AT2G18940 10.0kb downstream 10.0kb downstream 12666 true Chr2: 8193730-8206395 Arabidopsis thaliana
AT2G18940 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8193730-8203729 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360491 5261 Brassicaceae View MSA
123829466 5264 Brassicales-Malvales View MSA
124342808 5266 SBM View MSA
124238988 5268 Malvidae View MSA
124065938 5270 Rosid View MSA
123738887 5271 Pentapetalae View MSA
122785902 5272 Eudicot View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.703        
cufflinks 4.377        
cufflinks 16.137       High
cufflinks 4.725        
cufflinks 9.926        
cufflinks 4.251        

0 Strain