Gene : AT2G18840 A. thaliana TAIR10
Defline:  (1 of 2) PTHR21236//PTHR21236:SF9 - GOLGI MEMBRANE PROTEIN YIP1 // SUBFAMILY NOT NAMED Genomic Order:  1120
Name:  ? AT2G18840 Secondary Identifier:  ? PAC:19642831
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G18840 0.5kb upstream 0.5kb upstream 2394 true Chr2: 8157698-8160091 Arabidopsis thaliana
AT2G18840 0.5kb upstream 0.5kb upstream 500 false Chr2: 8157698-8158197 Arabidopsis thaliana
AT2G18840 0.5kb downstream 0.5kb downstream 2394 true Chr2: 8158198-8160591 Arabidopsis thaliana
AT2G18840 0.5kb downstream 0.5kb downstream 500 false Chr2: 8160092-8160591 Arabidopsis thaliana
AT2G18840 1.0kb upstream 1.0kb upstream 2894 true Chr2: 8157198-8160091 Arabidopsis thaliana
AT2G18840 1.0kb upstream 1.0kb upstream 1000 false Chr2: 8157198-8158197 Arabidopsis thaliana
AT2G18840 1.0kb downstream 1.0kb downstream 2894 true Chr2: 8158198-8161091 Arabidopsis thaliana
AT2G18840 1.0kb downstream 1.0kb downstream 1000 false Chr2: 8160092-8161091 Arabidopsis thaliana
AT2G18840 2.0kb upstream 2.0kb upstream 3894 true Chr2: 8156198-8160091 Arabidopsis thaliana
AT2G18840 2.0kb upstream 2.0kb upstream 2000 false Chr2: 8156198-8158197 Arabidopsis thaliana
AT2G18840 2.0kb downstream 2.0kb downstream 3894 true Chr2: 8158198-8162091 Arabidopsis thaliana
AT2G18840 2.0kb downstream 2.0kb downstream 2000 false Chr2: 8160092-8162091 Arabidopsis thaliana
AT2G18840 5.0kb upstream 5.0kb upstream 6894 true Chr2: 8153198-8160091 Arabidopsis thaliana
AT2G18840 5.0kb upstream 5.0kb upstream 5000 false Chr2: 8153198-8158197 Arabidopsis thaliana
AT2G18840 5.0kb downstream 5.0kb downstream 6894 true Chr2: 8158198-8165091 Arabidopsis thaliana
AT2G18840 5.0kb downstream 5.0kb downstream 5000 false Chr2: 8160092-8165091 Arabidopsis thaliana
AT2G18840 10.0kb upstream 10.0kb upstream 11894 true Chr2: 8148198-8160091 Arabidopsis thaliana
AT2G18840 10.0kb upstream 10.0kb upstream 10000 false Chr2: 8148198-8158197 Arabidopsis thaliana
AT2G18840 10.0kb downstream 10.0kb downstream 11894 true Chr2: 8158198-8170091 Arabidopsis thaliana
AT2G18840 10.0kb downstream 10.0kb downstream 10000 false Chr2: 8160092-8170091 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343473 5261 Brassicaceae View MSA
123841285 5264 Brassicales-Malvales View MSA
124338755 5266 SBM View MSA
124241484 5268 Malvidae View MSA
124062311 5270 Rosid View MSA
123737556 5271 Pentapetalae View MSA
122791123 5272 Eudicot View MSA
122046860 5273 Angiosperm View MSA
121349329 5274 Embryophyte View MSA
123428190 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.185        
cufflinks 8.371        
cufflinks 6.888       Low
cufflinks 10.171       High
cufflinks 7.964        
cufflinks 10.481       High

0 Strain