Gene : PIN1AT A. thaliana TAIR10
Primary Identifier:  ? AT2G18040 Defline:  (1 of 1) K09578 - peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 (PIN1)
Genomic Order:  1038 Name:  ? AT2G18040
Secondary Identifier:  ? PAC:19642079
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G18040 0.5kb upstream 0.5kb upstream 2207 true Chr2: 7841664-7843870 Arabidopsis thaliana
AT2G18040 0.5kb upstream 0.5kb upstream 500 false Chr2: 7841664-7842163 Arabidopsis thaliana
AT2G18040 0.5kb downstream 0.5kb downstream 2207 true Chr2: 7842164-7844370 Arabidopsis thaliana
AT2G18040 0.5kb downstream 0.5kb downstream 500 false Chr2: 7843871-7844370 Arabidopsis thaliana
AT2G18040 1.0kb upstream 1.0kb upstream 2707 true Chr2: 7841164-7843870 Arabidopsis thaliana
AT2G18040 1.0kb upstream 1.0kb upstream 1000 false Chr2: 7841164-7842163 Arabidopsis thaliana
AT2G18040 1.0kb downstream 1.0kb downstream 2707 true Chr2: 7842164-7844870 Arabidopsis thaliana
AT2G18040 1.0kb downstream 1.0kb downstream 1000 false Chr2: 7843871-7844870 Arabidopsis thaliana
AT2G18040 2.0kb upstream 2.0kb upstream 3707 true Chr2: 7840164-7843870 Arabidopsis thaliana
AT2G18040 2.0kb upstream 2.0kb upstream 2000 false Chr2: 7840164-7842163 Arabidopsis thaliana
AT2G18040 2.0kb downstream 2.0kb downstream 3707 true Chr2: 7842164-7845870 Arabidopsis thaliana
AT2G18040 2.0kb downstream 2.0kb downstream 2000 false Chr2: 7843871-7845870 Arabidopsis thaliana
AT2G18040 5.0kb upstream 5.0kb upstream 6707 true Chr2: 7837164-7843870 Arabidopsis thaliana
AT2G18040 5.0kb upstream 5.0kb upstream 5000 false Chr2: 7837164-7842163 Arabidopsis thaliana
AT2G18040 5.0kb downstream 5.0kb downstream 6707 true Chr2: 7842164-7848870 Arabidopsis thaliana
AT2G18040 5.0kb downstream 5.0kb downstream 5000 false Chr2: 7843871-7848870 Arabidopsis thaliana
AT2G18040 10.0kb upstream 10.0kb upstream 11707 true Chr2: 7832164-7843870 Arabidopsis thaliana
AT2G18040 10.0kb upstream 10.0kb upstream 10000 false Chr2: 7832164-7842163 Arabidopsis thaliana
AT2G18040 10.0kb downstream 10.0kb downstream 11707 true Chr2: 7842164-7853870 Arabidopsis thaliana
AT2G18040 10.0kb downstream 10.0kb downstream 10000 false Chr2: 7843871-7853870 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362383 5261 Brassicaceae View MSA
123835138 5264 Brassicales-Malvales View MSA
124350164 5266 SBM View MSA
124237983 5268 Malvidae View MSA
124061766 5270 Rosid View MSA
123750072 5271 Pentapetalae View MSA
122789506 5272 Eudicot View MSA
122046490 5273 Angiosperm View MSA
123429014 5275 Viridiplantae View MSA
121345205 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.248     High  
cufflinks 65.797     High  
cufflinks 41.939     High Low
cufflinks 64.564     High  
cufflinks 44.305     High Low
cufflinks 71.684     High High

0 Strain