Gene : AT2G17660 A. thaliana TAIR10
Defline:  (1 of 11) PF05627 - Cleavage site for pathogenic type III effector avirulence factor Avr (AvrRpt-cleavage) Genomic Order:  994
Name:  ? AT2G17660 Secondary Identifier:  ? PAC:19640265
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G17660 0.5kb upstream 0.5kb upstream 931 true Chr2: 7672782-7673712 Arabidopsis thaliana
AT2G17660 0.5kb upstream 0.5kb upstream 500 false Chr2: 7672782-7673281 Arabidopsis thaliana
AT2G17660 0.5kb downstream 0.5kb downstream 931 true Chr2: 7673282-7674212 Arabidopsis thaliana
AT2G17660 0.5kb downstream 0.5kb downstream 500 false Chr2: 7673713-7674212 Arabidopsis thaliana
AT2G17660 1.0kb upstream 1.0kb upstream 1431 true Chr2: 7672282-7673712 Arabidopsis thaliana
AT2G17660 1.0kb upstream 1.0kb upstream 1000 false Chr2: 7672282-7673281 Arabidopsis thaliana
AT2G17660 1.0kb downstream 1.0kb downstream 1431 true Chr2: 7673282-7674712 Arabidopsis thaliana
AT2G17660 1.0kb downstream 1.0kb downstream 1000 false Chr2: 7673713-7674712 Arabidopsis thaliana
AT2G17660 2.0kb upstream 2.0kb upstream 2431 true Chr2: 7671282-7673712 Arabidopsis thaliana
AT2G17660 2.0kb upstream 2.0kb upstream 2000 false Chr2: 7671282-7673281 Arabidopsis thaliana
AT2G17660 2.0kb downstream 2.0kb downstream 2431 true Chr2: 7673282-7675712 Arabidopsis thaliana
AT2G17660 2.0kb downstream 2.0kb downstream 2000 false Chr2: 7673713-7675712 Arabidopsis thaliana
AT2G17660 5.0kb upstream 5.0kb upstream 5431 true Chr2: 7668282-7673712 Arabidopsis thaliana
AT2G17660 5.0kb upstream 5.0kb upstream 5000 false Chr2: 7668282-7673281 Arabidopsis thaliana
AT2G17660 5.0kb downstream 5.0kb downstream 5431 true Chr2: 7673282-7678712 Arabidopsis thaliana
AT2G17660 5.0kb downstream 5.0kb downstream 5000 false Chr2: 7673713-7678712 Arabidopsis thaliana
AT2G17660 10.0kb upstream 10.0kb upstream 10431 true Chr2: 7663282-7673712 Arabidopsis thaliana
AT2G17660 10.0kb upstream 10.0kb upstream 10000 false Chr2: 7663282-7673281 Arabidopsis thaliana
AT2G17660 10.0kb downstream 10.0kb downstream 10431 true Chr2: 7673282-7683712 Arabidopsis thaliana
AT2G17660 10.0kb downstream 10.0kb downstream 10000 false Chr2: 7673713-7683712 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362654 5261 Brassicaceae View MSA
123839959 5264 Brassicales-Malvales View MSA
124345918 5266 SBM View MSA
124248769 5268 Malvidae View MSA
124074284 5270 Rosid View MSA
123751462 5271 Pentapetalae View MSA
122795351 5272 Eudicot View MSA
122048962 5273 Angiosperm View MSA
121311190 5274 Embryophyte View MSA
123348519 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.637        
cufflinks 89.627     High High
cufflinks 2.11        
cufflinks 32.487     High  
cufflinks 0.326       Low
cufflinks 69.785     High  

0 Strain