Gene : AT2G17550 A. thaliana TAIR10

Defline:  (1 of 1) PTHR21726//PTHR21726:SF37 - PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED Genomic Order:  983
Name:  ? AT2G17550 Secondary Identifier:  ? PAC:19642344

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G17550 0.5kb upstream 0.5kb upstream 4059 true Chr2: 7634274-7638332 Arabidopsis thaliana
AT2G17550 0.5kb upstream 0.5kb upstream 500 false Chr2: 7637833-7638332 Arabidopsis thaliana
AT2G17550 0.5kb downstream 0.5kb downstream 4059 true Chr2: 7633774-7637832 Arabidopsis thaliana
AT2G17550 0.5kb downstream 0.5kb downstream 500 false Chr2: 7633774-7634273 Arabidopsis thaliana
AT2G17550 1.0kb upstream 1.0kb upstream 4559 true Chr2: 7634274-7638832 Arabidopsis thaliana
AT2G17550 1.0kb upstream 1.0kb upstream 1000 false Chr2: 7637833-7638832 Arabidopsis thaliana
AT2G17550 1.0kb downstream 1.0kb downstream 4559 true Chr2: 7633274-7637832 Arabidopsis thaliana
AT2G17550 1.0kb downstream 1.0kb downstream 1000 false Chr2: 7633274-7634273 Arabidopsis thaliana
AT2G17550 2.0kb upstream 2.0kb upstream 5559 true Chr2: 7634274-7639832 Arabidopsis thaliana
AT2G17550 2.0kb upstream 2.0kb upstream 2000 false Chr2: 7637833-7639832 Arabidopsis thaliana
AT2G17550 2.0kb downstream 2.0kb downstream 5559 true Chr2: 7632274-7637832 Arabidopsis thaliana
AT2G17550 2.0kb downstream 2.0kb downstream 2000 false Chr2: 7632274-7634273 Arabidopsis thaliana
AT2G17550 5.0kb upstream 5.0kb upstream 8559 true Chr2: 7634274-7642832 Arabidopsis thaliana
AT2G17550 5.0kb upstream 5.0kb upstream 5000 false Chr2: 7637833-7642832 Arabidopsis thaliana
AT2G17550 5.0kb downstream 5.0kb downstream 8559 true Chr2: 7629274-7637832 Arabidopsis thaliana
AT2G17550 5.0kb downstream 5.0kb downstream 5000 false Chr2: 7629274-7634273 Arabidopsis thaliana
AT2G17550 10.0kb upstream 10.0kb upstream 13559 true Chr2: 7634274-7647832 Arabidopsis thaliana
AT2G17550 10.0kb upstream 10.0kb upstream 10000 false Chr2: 7637833-7647832 Arabidopsis thaliana
AT2G17550 10.0kb downstream 10.0kb downstream 13559 true Chr2: 7624274-7637832 Arabidopsis thaliana
AT2G17550 10.0kb downstream 10.0kb downstream 10000 false Chr2: 7624274-7634273 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370939 5261 Brassicaceae View MSA
123838982 5264 Brassicales-Malvales View MSA
124342919 5266 SBM View MSA
124237541 5268 Malvidae View MSA
124065017 5270 Rosid View MSA
123737435 5271 Pentapetalae View MSA
122794026 5272 Eudicot View MSA
122043735 5273 Angiosperm View MSA
121350314 5274 Embryophyte View MSA
123381675 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.468       High
cufflinks 2.471        
cufflinks 6.534        
cufflinks 2.881        
cufflinks 5.558        
cufflinks 2.601        

0 Strain