Gene : IRE1A A. thaliana TAIR10
Primary Identifier:  ? AT2G17520 Defline:  (1 of 1) K08852 - serine/threonine-protein kinase/endoribonuclease IRE1 (ERN1)
Genomic Order:  979 Name:  ? AT2G17520
Secondary Identifier:  ? PAC:19641997
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G17520 0.5kb upstream 0.5kb upstream 4400 true Chr2: 7616710-7621109 Arabidopsis thaliana
AT2G17520 0.5kb upstream 0.5kb upstream 500 false Chr2: 7616710-7617209 Arabidopsis thaliana
AT2G17520 0.5kb downstream 0.5kb downstream 4400 true Chr2: 7617210-7621609 Arabidopsis thaliana
AT2G17520 0.5kb downstream 0.5kb downstream 500 false Chr2: 7621110-7621609 Arabidopsis thaliana
AT2G17520 1.0kb upstream 1.0kb upstream 4900 true Chr2: 7616210-7621109 Arabidopsis thaliana
AT2G17520 1.0kb upstream 1.0kb upstream 1000 false Chr2: 7616210-7617209 Arabidopsis thaliana
AT2G17520 1.0kb downstream 1.0kb downstream 4900 true Chr2: 7617210-7622109 Arabidopsis thaliana
AT2G17520 1.0kb downstream 1.0kb downstream 1000 false Chr2: 7621110-7622109 Arabidopsis thaliana
AT2G17520 2.0kb upstream 2.0kb upstream 5900 true Chr2: 7615210-7621109 Arabidopsis thaliana
AT2G17520 2.0kb upstream 2.0kb upstream 2000 false Chr2: 7615210-7617209 Arabidopsis thaliana
AT2G17520 2.0kb downstream 2.0kb downstream 5900 true Chr2: 7617210-7623109 Arabidopsis thaliana
AT2G17520 2.0kb downstream 2.0kb downstream 2000 false Chr2: 7621110-7623109 Arabidopsis thaliana
AT2G17520 5.0kb upstream 5.0kb upstream 8900 true Chr2: 7612210-7621109 Arabidopsis thaliana
AT2G17520 5.0kb upstream 5.0kb upstream 5000 false Chr2: 7612210-7617209 Arabidopsis thaliana
AT2G17520 5.0kb downstream 5.0kb downstream 8900 true Chr2: 7617210-7626109 Arabidopsis thaliana
AT2G17520 5.0kb downstream 5.0kb downstream 5000 false Chr2: 7621110-7626109 Arabidopsis thaliana
AT2G17520 10.0kb upstream 10.0kb upstream 13900 true Chr2: 7607210-7621109 Arabidopsis thaliana
AT2G17520 10.0kb upstream 10.0kb upstream 10000 false Chr2: 7607210-7617209 Arabidopsis thaliana
AT2G17520 10.0kb downstream 10.0kb downstream 13900 true Chr2: 7617210-7631109 Arabidopsis thaliana
AT2G17520 10.0kb downstream 10.0kb downstream 10000 false Chr2: 7621110-7631109 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361867 5261 Brassicaceae View MSA
123827777 5264 Brassicales-Malvales View MSA
124340265 5266 SBM View MSA
124250283 5268 Malvidae View MSA
124069221 5270 Rosid View MSA
123736649 5271 Pentapetalae View MSA
122796979 5272 Eudicot View MSA
122047028 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121347978 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.026        
cufflinks 26.267        
cufflinks 14.59       Low
cufflinks 26.681        
cufflinks 18.665        
cufflinks 24.367        

0 Strain