Gene : AT2G45620 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12271//PTHR12271:SF58 - POLY A POLYMERASE CID PAP -RELATED // EXPRESSED PROTEIN Genomic Order:  3981
Name:  ? AT2G45620 Secondary Identifier:  ? PAC:19643563
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G45620 0.5kb upstream 0.5kb upstream 3541 true Chr2: 18792364-18795904 Arabidopsis thaliana
AT2G45620 0.5kb upstream 0.5kb upstream 500 false Chr2: 18792364-18792863 Arabidopsis thaliana
AT2G45620 0.5kb downstream 0.5kb downstream 3541 true Chr2: 18792864-18796404 Arabidopsis thaliana
AT2G45620 0.5kb downstream 0.5kb downstream 500 false Chr2: 18795905-18796404 Arabidopsis thaliana
AT2G45620 1.0kb upstream 1.0kb upstream 4041 true Chr2: 18791864-18795904 Arabidopsis thaliana
AT2G45620 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18791864-18792863 Arabidopsis thaliana
AT2G45620 1.0kb downstream 1.0kb downstream 4041 true Chr2: 18792864-18796904 Arabidopsis thaliana
AT2G45620 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18795905-18796904 Arabidopsis thaliana
AT2G45620 2.0kb upstream 2.0kb upstream 5041 true Chr2: 18790864-18795904 Arabidopsis thaliana
AT2G45620 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18790864-18792863 Arabidopsis thaliana
AT2G45620 2.0kb downstream 2.0kb downstream 5041 true Chr2: 18792864-18797904 Arabidopsis thaliana
AT2G45620 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18795905-18797904 Arabidopsis thaliana
AT2G45620 5.0kb upstream 5.0kb upstream 8041 true Chr2: 18787864-18795904 Arabidopsis thaliana
AT2G45620 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18787864-18792863 Arabidopsis thaliana
AT2G45620 5.0kb downstream 5.0kb downstream 8041 true Chr2: 18792864-18800904 Arabidopsis thaliana
AT2G45620 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18795905-18800904 Arabidopsis thaliana
AT2G45620 10.0kb upstream 10.0kb upstream 13041 true Chr2: 18782864-18795904 Arabidopsis thaliana
AT2G45620 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18782864-18792863 Arabidopsis thaliana
AT2G45620 10.0kb downstream 10.0kb downstream 13041 true Chr2: 18792864-18805904 Arabidopsis thaliana
AT2G45620 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18795905-18805904 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369537 5261 Brassicaceae View MSA
123836352 5264 Brassicales-Malvales View MSA
124345717 5266 SBM View MSA
124249625 5268 Malvidae View MSA
124067055 5270 Rosid View MSA
123752955 5271 Pentapetalae View MSA
122796167 5272 Eudicot View MSA
122048124 5273 Angiosperm View MSA
121349323 5274 Embryophyte View MSA
123428586 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.275       Low
cufflinks 35.837     High High
cufflinks 28.011     High  
cufflinks 35.572     High High
cufflinks 29.858     High  
cufflinks 30.345     High  

0 Strain