Gene : HAM1 A. thaliana TAIR10
Primary Identifier:  ? AT2G45160 Defline:  (1 of 3) PTHR31636//PTHR31636:SF11 - FAMILY NOT NAMED // SCARECROW-LIKE PROTEIN 22-RELATED
Genomic Order:  3933 Name:  ? AT2G45160
Secondary Identifier:  ? PAC:19641387
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G45160 0.5kb upstream 0.5kb upstream 2789 true Chr2: 18617862-18620650 Arabidopsis thaliana
AT2G45160 0.5kb upstream 0.5kb upstream 500 false Chr2: 18620151-18620650 Arabidopsis thaliana
AT2G45160 0.5kb downstream 0.5kb downstream 2789 true Chr2: 18617362-18620150 Arabidopsis thaliana
AT2G45160 0.5kb downstream 0.5kb downstream 500 false Chr2: 18617362-18617861 Arabidopsis thaliana
AT2G45160 1.0kb upstream 1.0kb upstream 3289 true Chr2: 18617862-18621150 Arabidopsis thaliana
AT2G45160 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18620151-18621150 Arabidopsis thaliana
AT2G45160 1.0kb downstream 1.0kb downstream 3289 true Chr2: 18616862-18620150 Arabidopsis thaliana
AT2G45160 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18616862-18617861 Arabidopsis thaliana
AT2G45160 2.0kb upstream 2.0kb upstream 4289 true Chr2: 18617862-18622150 Arabidopsis thaliana
AT2G45160 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18620151-18622150 Arabidopsis thaliana
AT2G45160 2.0kb downstream 2.0kb downstream 4289 true Chr2: 18615862-18620150 Arabidopsis thaliana
AT2G45160 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18615862-18617861 Arabidopsis thaliana
AT2G45160 5.0kb upstream 5.0kb upstream 7289 true Chr2: 18617862-18625150 Arabidopsis thaliana
AT2G45160 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18620151-18625150 Arabidopsis thaliana
AT2G45160 5.0kb downstream 5.0kb downstream 7289 true Chr2: 18612862-18620150 Arabidopsis thaliana
AT2G45160 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18612862-18617861 Arabidopsis thaliana
AT2G45160 10.0kb upstream 10.0kb upstream 12289 true Chr2: 18617862-18630150 Arabidopsis thaliana
AT2G45160 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18620151-18630150 Arabidopsis thaliana
AT2G45160 10.0kb downstream 10.0kb downstream 12289 true Chr2: 18607862-18620150 Arabidopsis thaliana
AT2G45160 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18607862-18617861 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360865 5261 Brassicaceae View MSA
123841679 5264 Brassicales-Malvales View MSA
124337623 5266 SBM View MSA
124250947 5268 Malvidae View MSA
124067297 5270 Rosid View MSA
123748991 5271 Pentapetalae View MSA
122793941 5272 Eudicot View MSA
122048418 5273 Angiosperm View MSA
121350524 5274 Embryophyte View MSA
123381771 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.916        
cufflinks 11.469       Low
cufflinks 17.003       High
cufflinks 14.549        
cufflinks 16.513        
cufflinks 11.107       Low

0 Strain