Gene : HUB1 A. thaliana TAIR10
Primary Identifier:  ? AT2G44950 Defline:  (1 of 1) PTHR23163//PTHR23163:SF3 - RING FINGER PROTEIN-RELATED // E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1
Genomic Order:  3913 Name:  ? AT2G44950
Secondary Identifier:  ? PAC:19642681
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G44950 0.5kb upstream 0.5kb upstream 6879 true Chr2: 18542213-18549091 Arabidopsis thaliana
AT2G44950 0.5kb upstream 0.5kb upstream 500 false Chr2: 18548592-18549091 Arabidopsis thaliana
AT2G44950 0.5kb downstream 0.5kb downstream 6879 true Chr2: 18541713-18548591 Arabidopsis thaliana
AT2G44950 0.5kb downstream 0.5kb downstream 500 false Chr2: 18541713-18542212 Arabidopsis thaliana
AT2G44950 1.0kb upstream 1.0kb upstream 7379 true Chr2: 18542213-18549591 Arabidopsis thaliana
AT2G44950 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18548592-18549591 Arabidopsis thaliana
AT2G44950 1.0kb downstream 1.0kb downstream 7379 true Chr2: 18541213-18548591 Arabidopsis thaliana
AT2G44950 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18541213-18542212 Arabidopsis thaliana
AT2G44950 2.0kb upstream 2.0kb upstream 8379 true Chr2: 18542213-18550591 Arabidopsis thaliana
AT2G44950 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18548592-18550591 Arabidopsis thaliana
AT2G44950 2.0kb downstream 2.0kb downstream 8379 true Chr2: 18540213-18548591 Arabidopsis thaliana
AT2G44950 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18540213-18542212 Arabidopsis thaliana
AT2G44950 5.0kb upstream 5.0kb upstream 11379 true Chr2: 18542213-18553591 Arabidopsis thaliana
AT2G44950 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18548592-18553591 Arabidopsis thaliana
AT2G44950 5.0kb downstream 5.0kb downstream 11379 true Chr2: 18537213-18548591 Arabidopsis thaliana
AT2G44950 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18537213-18542212 Arabidopsis thaliana
AT2G44950 10.0kb upstream 10.0kb upstream 16379 true Chr2: 18542213-18558591 Arabidopsis thaliana
AT2G44950 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18548592-18558591 Arabidopsis thaliana
AT2G44950 10.0kb downstream 10.0kb downstream 16379 true Chr2: 18532213-18548591 Arabidopsis thaliana
AT2G44950 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18532213-18542212 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364133 5261 Brassicaceae View MSA
123841035 5264 Brassicales-Malvales View MSA
124344060 5266 SBM View MSA
124251962 5268 Malvidae View MSA
124061906 5270 Rosid View MSA
123753299 5271 Pentapetalae View MSA
122793673 5272 Eudicot View MSA
122042098 5273 Angiosperm View MSA
121349326 5274 Embryophyte View MSA
123423997 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.836        
cufflinks 8.354        
cufflinks 5.513        
cufflinks 9.277       High
cufflinks 5.682        
cufflinks 7.445        

0 Strain