Gene : HOL3 A. thaliana TAIR10
Primary Identifier:  ? AT2G43940 Defline:  (1 of 3) 2.1.1.165 - Methyl halide transferase / Methyl chloride transferase
Genomic Order:  3804 Name:  ? AT2G43940
Secondary Identifier:  ? PAC:19642095
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6730 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43940 0.5kb upstream 0.5kb upstream 2235 true Chr2: 18195953-18198187 Arabidopsis thaliana
AT2G43940 0.5kb upstream 0.5kb upstream 500 false Chr2: 18197688-18198187 Arabidopsis thaliana
AT2G43940 0.5kb downstream 0.5kb downstream 2235 true Chr2: 18195453-18197687 Arabidopsis thaliana
AT2G43940 0.5kb downstream 0.5kb downstream 500 false Chr2: 18195453-18195952 Arabidopsis thaliana
AT2G43940 1.0kb upstream 1.0kb upstream 2735 true Chr2: 18195953-18198687 Arabidopsis thaliana
AT2G43940 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18197688-18198687 Arabidopsis thaliana
AT2G43940 1.0kb downstream 1.0kb downstream 2735 true Chr2: 18194953-18197687 Arabidopsis thaliana
AT2G43940 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18194953-18195952 Arabidopsis thaliana
AT2G43940 2.0kb upstream 2.0kb upstream 3735 true Chr2: 18195953-18199687 Arabidopsis thaliana
AT2G43940 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18197688-18199687 Arabidopsis thaliana
AT2G43940 2.0kb downstream 2.0kb downstream 3735 true Chr2: 18193953-18197687 Arabidopsis thaliana
AT2G43940 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18193953-18195952 Arabidopsis thaliana
AT2G43940 5.0kb upstream 5.0kb upstream 6735 true Chr2: 18195953-18202687 Arabidopsis thaliana
AT2G43940 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18197688-18202687 Arabidopsis thaliana
AT2G43940 5.0kb downstream 5.0kb downstream 6735 true Chr2: 18190953-18197687 Arabidopsis thaliana
AT2G43940 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18190953-18195952 Arabidopsis thaliana
AT2G43940 10.0kb upstream 10.0kb upstream 11735 true Chr2: 18195953-18207687 Arabidopsis thaliana
AT2G43940 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18197688-18207687 Arabidopsis thaliana
AT2G43940 10.0kb downstream 10.0kb downstream 11735 true Chr2: 18185953-18197687 Arabidopsis thaliana
AT2G43940 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18185953-18195952 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040998 5273 Angiosperm View MSA
122369932 5261 Brassicaceae View MSA
123830657 5264 Brassicales-Malvales View MSA
124340535 5266 SBM View MSA
124249928 5268 Malvidae View MSA
124062480 5270 Rosid View MSA
123741516 5271 Pentapetalae View MSA
122787358 5272 Eudicot View MSA
121346954 5274 Embryophyte View MSA
123424412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.674        
cufflinks 11.639        
cufflinks 6.183        
cufflinks 13.663       High
cufflinks 5.562       Low
cufflinks 11.219        

0 Strain