Gene : HOL1 A. thaliana TAIR10
Primary Identifier:  ? AT2G43910 Defline:  (1 of 1) 2.1.1.9 - Thiol S-methyltransferase
Genomic Order:  3801 Name:  ? AT2G43910
Secondary Identifier:  ? PAC:19643040
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6730 Arabidopsis thaliana pathologic  
Athaliana PWY-6736 Arabidopsis thaliana pathologic  
Athaliana PWY-6842 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G43910 0.5kb upstream 0.5kb upstream 3068 true Chr2: 18184461-18187528 Arabidopsis thaliana
AT2G43910 0.5kb upstream 0.5kb upstream 500 false Chr2: 18187029-18187528 Arabidopsis thaliana
AT2G43910 0.5kb downstream 0.5kb downstream 3068 true Chr2: 18183961-18187028 Arabidopsis thaliana
AT2G43910 0.5kb downstream 0.5kb downstream 500 false Chr2: 18183961-18184460 Arabidopsis thaliana
AT2G43910 1.0kb upstream 1.0kb upstream 3568 true Chr2: 18184461-18188028 Arabidopsis thaliana
AT2G43910 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18187029-18188028 Arabidopsis thaliana
AT2G43910 1.0kb downstream 1.0kb downstream 3568 true Chr2: 18183461-18187028 Arabidopsis thaliana
AT2G43910 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18183461-18184460 Arabidopsis thaliana
AT2G43910 2.0kb upstream 2.0kb upstream 4568 true Chr2: 18184461-18189028 Arabidopsis thaliana
AT2G43910 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18187029-18189028 Arabidopsis thaliana
AT2G43910 2.0kb downstream 2.0kb downstream 4568 true Chr2: 18182461-18187028 Arabidopsis thaliana
AT2G43910 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18182461-18184460 Arabidopsis thaliana
AT2G43910 5.0kb upstream 5.0kb upstream 7568 true Chr2: 18184461-18192028 Arabidopsis thaliana
AT2G43910 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18187029-18192028 Arabidopsis thaliana
AT2G43910 5.0kb downstream 5.0kb downstream 7568 true Chr2: 18179461-18187028 Arabidopsis thaliana
AT2G43910 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18179461-18184460 Arabidopsis thaliana
AT2G43910 10.0kb upstream 10.0kb upstream 12568 true Chr2: 18184461-18197028 Arabidopsis thaliana
AT2G43910 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18187029-18197028 Arabidopsis thaliana
AT2G43910 10.0kb downstream 10.0kb downstream 12568 true Chr2: 18174461-18187028 Arabidopsis thaliana
AT2G43910 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18174461-18184460 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040998 5273 Angiosperm View MSA
122379294 5261 Brassicaceae View MSA
123802194 5264 Brassicales-Malvales View MSA
124299408 5266 SBM View MSA
124249928 5268 Malvidae View MSA
124062480 5270 Rosid View MSA
123741516 5271 Pentapetalae View MSA
122787358 5272 Eudicot View MSA
121346954 5274 Embryophyte View MSA
123424412 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.442        
cufflinks 8.393        
cufflinks 13.889       High
cufflinks 10.266        
cufflinks 14.014       High
cufflinks 6.531       Low

0 Strain