Gene : SHP2 A. thaliana TAIR10
Primary Identifier:  ? AT2G42830 Defline:  (1 of 2) PTHR11945//PTHR11945:SF150 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED
Genomic Order:  3682 Name:  ? AT2G42830
Secondary Identifier:  ? PAC:19643527
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42830 0.5kb upstream 0.5kb upstream 4259 true Chr2: 17819755-17824013 Arabidopsis thaliana
AT2G42830 0.5kb upstream 0.5kb upstream 500 false Chr2: 17819755-17820254 Arabidopsis thaliana
AT2G42830 0.5kb downstream 0.5kb downstream 4259 true Chr2: 17820255-17824513 Arabidopsis thaliana
AT2G42830 0.5kb downstream 0.5kb downstream 500 false Chr2: 17824014-17824513 Arabidopsis thaliana
AT2G42830 1.0kb upstream 1.0kb upstream 4759 true Chr2: 17819255-17824013 Arabidopsis thaliana
AT2G42830 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17819255-17820254 Arabidopsis thaliana
AT2G42830 1.0kb downstream 1.0kb downstream 4759 true Chr2: 17820255-17825013 Arabidopsis thaliana
AT2G42830 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17824014-17825013 Arabidopsis thaliana
AT2G42830 2.0kb upstream 2.0kb upstream 5759 true Chr2: 17818255-17824013 Arabidopsis thaliana
AT2G42830 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17818255-17820254 Arabidopsis thaliana
AT2G42830 2.0kb downstream 2.0kb downstream 5759 true Chr2: 17820255-17826013 Arabidopsis thaliana
AT2G42830 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17824014-17826013 Arabidopsis thaliana
AT2G42830 5.0kb upstream 5.0kb upstream 8759 true Chr2: 17815255-17824013 Arabidopsis thaliana
AT2G42830 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17815255-17820254 Arabidopsis thaliana
AT2G42830 5.0kb downstream 5.0kb downstream 8759 true Chr2: 17820255-17829013 Arabidopsis thaliana
AT2G42830 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17824014-17829013 Arabidopsis thaliana
AT2G42830 10.0kb upstream 10.0kb upstream 13759 true Chr2: 17810255-17824013 Arabidopsis thaliana
AT2G42830 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17810255-17820254 Arabidopsis thaliana
AT2G42830 10.0kb downstream 10.0kb downstream 13759 true Chr2: 17820255-17834013 Arabidopsis thaliana
AT2G42830 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17824014-17834013 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367248 5261 Brassicaceae View MSA
123838020 5264 Brassicales-Malvales View MSA
124349939 5266 SBM View MSA
124253433 5268 Malvidae View MSA
124063483 5270 Rosid View MSA
123747867 5271 Pentapetalae View MSA
122793842 5272 Eudicot View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low  
cufflinks 0.04     Low High
cufflinks 0.002     Low Low
cufflinks 0.013     Low  
cufflinks 0.007     Low  
cufflinks 0.03     Low  

0 Strain