Gene : AT2G42900 A. thaliana TAIR10
Defline:  (1 of 4) PF04450 - Peptidase of plants and bacteria (BSP) Genomic Order:  3690
Name:  ? AT2G42900 Secondary Identifier:  ? PAC:19641511
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42900 0.5kb upstream 0.5kb upstream 1425 true Chr2: 17854057-17855481 Arabidopsis thaliana
AT2G42900 0.5kb upstream 0.5kb upstream 500 false Chr2: 17854057-17854556 Arabidopsis thaliana
AT2G42900 0.5kb downstream 0.5kb downstream 1425 true Chr2: 17854557-17855981 Arabidopsis thaliana
AT2G42900 0.5kb downstream 0.5kb downstream 500 false Chr2: 17855482-17855981 Arabidopsis thaliana
AT2G42900 1.0kb upstream 1.0kb upstream 1925 true Chr2: 17853557-17855481 Arabidopsis thaliana
AT2G42900 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17853557-17854556 Arabidopsis thaliana
AT2G42900 1.0kb downstream 1.0kb downstream 1925 true Chr2: 17854557-17856481 Arabidopsis thaliana
AT2G42900 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17855482-17856481 Arabidopsis thaliana
AT2G42900 2.0kb upstream 2.0kb upstream 2925 true Chr2: 17852557-17855481 Arabidopsis thaliana
AT2G42900 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17852557-17854556 Arabidopsis thaliana
AT2G42900 2.0kb downstream 2.0kb downstream 2925 true Chr2: 17854557-17857481 Arabidopsis thaliana
AT2G42900 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17855482-17857481 Arabidopsis thaliana
AT2G42900 5.0kb upstream 5.0kb upstream 5925 true Chr2: 17849557-17855481 Arabidopsis thaliana
AT2G42900 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17849557-17854556 Arabidopsis thaliana
AT2G42900 5.0kb downstream 5.0kb downstream 5925 true Chr2: 17854557-17860481 Arabidopsis thaliana
AT2G42900 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17855482-17860481 Arabidopsis thaliana
AT2G42900 10.0kb upstream 10.0kb upstream 10925 true Chr2: 17844557-17855481 Arabidopsis thaliana
AT2G42900 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17844557-17854556 Arabidopsis thaliana
AT2G42900 10.0kb downstream 10.0kb downstream 10925 true Chr2: 17854557-17865481 Arabidopsis thaliana
AT2G42900 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17855482-17865481 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378478 5261 Brassicaceae View MSA
123837336 5264 Brassicales-Malvales View MSA
124346829 5266 SBM View MSA
124246308 5268 Malvidae View MSA
124065171 5270 Rosid View MSA
123741196 5271 Pentapetalae View MSA
122795014 5272 Eudicot View MSA
122048300 5273 Angiosperm View MSA
121310921 5274 Embryophyte View MSA
123348293 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.184        
cufflinks 0.869        
cufflinks 3.136       High
cufflinks 0.732        
cufflinks 1.021        
cufflinks 0.532       Low

0 Strain