Gene : CSY3 A. thaliana TAIR10
Primary Identifier:  ? AT2G42790 Defline:  (1 of 4) 2.3.3.1 - Citrate (Si)-synthase / Citrate oxaloacetate-lyase ((pro-3S)-CH(2)COO->acetyl-CoA)
Genomic Order:  3678 Name:  ? AT2G42790
Secondary Identifier:  ? PAC:19641820
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5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY-6549 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42790 0.5kb upstream 0.5kb upstream 5079 true Chr2: 17801471-17806549 Arabidopsis thaliana
AT2G42790 0.5kb upstream 0.5kb upstream 500 false Chr2: 17806050-17806549 Arabidopsis thaliana
AT2G42790 0.5kb downstream 0.5kb downstream 5079 true Chr2: 17800971-17806049 Arabidopsis thaliana
AT2G42790 0.5kb downstream 0.5kb downstream 500 false Chr2: 17800971-17801470 Arabidopsis thaliana
AT2G42790 1.0kb upstream 1.0kb upstream 5579 true Chr2: 17801471-17807049 Arabidopsis thaliana
AT2G42790 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17806050-17807049 Arabidopsis thaliana
AT2G42790 1.0kb downstream 1.0kb downstream 5579 true Chr2: 17800471-17806049 Arabidopsis thaliana
AT2G42790 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17800471-17801470 Arabidopsis thaliana
AT2G42790 2.0kb upstream 2.0kb upstream 6579 true Chr2: 17801471-17808049 Arabidopsis thaliana
AT2G42790 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17806050-17808049 Arabidopsis thaliana
AT2G42790 2.0kb downstream 2.0kb downstream 6579 true Chr2: 17799471-17806049 Arabidopsis thaliana
AT2G42790 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17799471-17801470 Arabidopsis thaliana
AT2G42790 5.0kb upstream 5.0kb upstream 9579 true Chr2: 17801471-17811049 Arabidopsis thaliana
AT2G42790 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17806050-17811049 Arabidopsis thaliana
AT2G42790 5.0kb downstream 5.0kb downstream 9579 true Chr2: 17796471-17806049 Arabidopsis thaliana
AT2G42790 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17796471-17801470 Arabidopsis thaliana
AT2G42790 10.0kb upstream 10.0kb upstream 14579 true Chr2: 17801471-17816049 Arabidopsis thaliana
AT2G42790 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17806050-17816049 Arabidopsis thaliana
AT2G42790 10.0kb downstream 10.0kb downstream 14579 true Chr2: 17791471-17806049 Arabidopsis thaliana
AT2G42790 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17791471-17801470 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379222 5261 Brassicaceae View MSA
123836656 5264 Brassicales-Malvales View MSA
124345629 5266 SBM View MSA
124251480 5268 Malvidae View MSA
124065792 5270 Rosid View MSA
123748183 5271 Pentapetalae View MSA
122794190 5272 Eudicot View MSA
122044026 5273 Angiosperm View MSA
121344650 5274 Embryophyte View MSA
123424100 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.651        
cufflinks 13.109       Low
cufflinks 18.58        
cufflinks 17.25        
cufflinks 26.779     High High
cufflinks 12.418       Low

0 Strain