Gene : AT2G42560 A. thaliana TAIR10
Defline:  (1 of 5) PF02987 - Late embryogenesis abundant protein (LEA_4) Genomic Order:  3656
Name:  ? AT2G42560 Secondary Identifier:  ? PAC:19641757
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42560 0.5kb upstream 0.5kb upstream 2775 true Chr2: 17714638-17717412 Arabidopsis thaliana
AT2G42560 0.5kb upstream 0.5kb upstream 500 false Chr2: 17716913-17717412 Arabidopsis thaliana
AT2G42560 0.5kb downstream 0.5kb downstream 2775 true Chr2: 17714138-17716912 Arabidopsis thaliana
AT2G42560 0.5kb downstream 0.5kb downstream 500 false Chr2: 17714138-17714637 Arabidopsis thaliana
AT2G42560 1.0kb upstream 1.0kb upstream 3275 true Chr2: 17714638-17717912 Arabidopsis thaliana
AT2G42560 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17716913-17717912 Arabidopsis thaliana
AT2G42560 1.0kb downstream 1.0kb downstream 3275 true Chr2: 17713638-17716912 Arabidopsis thaliana
AT2G42560 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17713638-17714637 Arabidopsis thaliana
AT2G42560 2.0kb upstream 2.0kb upstream 4275 true Chr2: 17714638-17718912 Arabidopsis thaliana
AT2G42560 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17716913-17718912 Arabidopsis thaliana
AT2G42560 2.0kb downstream 2.0kb downstream 4275 true Chr2: 17712638-17716912 Arabidopsis thaliana
AT2G42560 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17712638-17714637 Arabidopsis thaliana
AT2G42560 5.0kb upstream 5.0kb upstream 7275 true Chr2: 17714638-17721912 Arabidopsis thaliana
AT2G42560 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17716913-17721912 Arabidopsis thaliana
AT2G42560 5.0kb downstream 5.0kb downstream 7275 true Chr2: 17709638-17716912 Arabidopsis thaliana
AT2G42560 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17709638-17714637 Arabidopsis thaliana
AT2G42560 10.0kb upstream 10.0kb upstream 12275 true Chr2: 17714638-17726912 Arabidopsis thaliana
AT2G42560 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17716913-17726912 Arabidopsis thaliana
AT2G42560 10.0kb downstream 10.0kb downstream 12275 true Chr2: 17704638-17716912 Arabidopsis thaliana
AT2G42560 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17704638-17714637 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368988 5261 Brassicaceae View MSA
123839140 5264 Brassicales-Malvales View MSA
124346780 5266 SBM View MSA
124253564 5268 Malvidae View MSA
124071734 5270 Rosid View MSA
123743630 5271 Pentapetalae View MSA
122796443 5272 Eudicot View MSA
122050999 5273 Angiosperm View MSA
121350297 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.585        
cufflinks 0.101     Low  
cufflinks 0.009     Low Low
cufflinks 0.792       High
cufflinks 0.103     Low  
cufflinks 0.172     Low  

0 Strain