Gene : PLDBETA1 A. thaliana TAIR10
Primary Identifier:  ? AT2G42010 Defline:  (1 of 5) PTHR18896//PTHR18896:SF65 - PHOSPHOLIPASE D // PHOSPHOLIPASE D BETA 1-RELATED
Genomic Order:  3603 Name:  ? AT2G42010
Secondary Identifier:  ? PAC:19638154
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana LIPASYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-3561 Arabidopsis thaliana pathologic  
Athaliana PWY-7039 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G42010 0.5kb upstream 0.5kb upstream 6088 true Chr2: 17532813-17538900 Arabidopsis thaliana
AT2G42010 0.5kb upstream 0.5kb upstream 500 false Chr2: 17538401-17538900 Arabidopsis thaliana
AT2G42010 0.5kb downstream 0.5kb downstream 6088 true Chr2: 17532313-17538400 Arabidopsis thaliana
AT2G42010 0.5kb downstream 0.5kb downstream 500 false Chr2: 17532313-17532812 Arabidopsis thaliana
AT2G42010 1.0kb upstream 1.0kb upstream 6588 true Chr2: 17532813-17539400 Arabidopsis thaliana
AT2G42010 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17538401-17539400 Arabidopsis thaliana
AT2G42010 1.0kb downstream 1.0kb downstream 6588 true Chr2: 17531813-17538400 Arabidopsis thaliana
AT2G42010 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17531813-17532812 Arabidopsis thaliana
AT2G42010 2.0kb upstream 2.0kb upstream 7588 true Chr2: 17532813-17540400 Arabidopsis thaliana
AT2G42010 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17538401-17540400 Arabidopsis thaliana
AT2G42010 2.0kb downstream 2.0kb downstream 7588 true Chr2: 17530813-17538400 Arabidopsis thaliana
AT2G42010 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17530813-17532812 Arabidopsis thaliana
AT2G42010 5.0kb upstream 5.0kb upstream 10588 true Chr2: 17532813-17543400 Arabidopsis thaliana
AT2G42010 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17538401-17543400 Arabidopsis thaliana
AT2G42010 5.0kb downstream 5.0kb downstream 10588 true Chr2: 17527813-17538400 Arabidopsis thaliana
AT2G42010 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17527813-17532812 Arabidopsis thaliana
AT2G42010 10.0kb upstream 10.0kb upstream 15588 true Chr2: 17532813-17548400 Arabidopsis thaliana
AT2G42010 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17538401-17548400 Arabidopsis thaliana
AT2G42010 10.0kb downstream 10.0kb downstream 15588 true Chr2: 17522813-17538400 Arabidopsis thaliana
AT2G42010 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17522813-17532812 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365483 5261 Brassicaceae View MSA
123832131 5264 Brassicales-Malvales View MSA
124336574 5266 SBM View MSA
124239673 5268 Malvidae View MSA
124072300 5270 Rosid View MSA
123749008 5271 Pentapetalae View MSA
122790888 5272 Eudicot View MSA
122043294 5273 Angiosperm View MSA
121349961 5274 Embryophyte View MSA
123381517 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.28        
cufflinks 9.515        
cufflinks 5.333       Low
cufflinks 9.164        
cufflinks 6.472        
cufflinks 9.947       High

0 Strain