Gene : AT2G41980 A. thaliana TAIR10
Defline:  (1 of 16) K04506 - E3 ubiquitin-protein ligase SIAH1 (SIAH1) Genomic Order:  3599
Name:  ? AT2G41980 Secondary Identifier:  ? PAC:19643024
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G41980 0.5kb upstream 0.5kb upstream 2921 true Chr2: 17523494-17526414 Arabidopsis thaliana
AT2G41980 0.5kb upstream 0.5kb upstream 500 false Chr2: 17525915-17526414 Arabidopsis thaliana
AT2G41980 0.5kb downstream 0.5kb downstream 2921 true Chr2: 17522994-17525914 Arabidopsis thaliana
AT2G41980 0.5kb downstream 0.5kb downstream 500 false Chr2: 17522994-17523493 Arabidopsis thaliana
AT2G41980 1.0kb upstream 1.0kb upstream 3421 true Chr2: 17523494-17526914 Arabidopsis thaliana
AT2G41980 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17525915-17526914 Arabidopsis thaliana
AT2G41980 1.0kb downstream 1.0kb downstream 3421 true Chr2: 17522494-17525914 Arabidopsis thaliana
AT2G41980 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17522494-17523493 Arabidopsis thaliana
AT2G41980 2.0kb upstream 2.0kb upstream 4421 true Chr2: 17523494-17527914 Arabidopsis thaliana
AT2G41980 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17525915-17527914 Arabidopsis thaliana
AT2G41980 2.0kb downstream 2.0kb downstream 4421 true Chr2: 17521494-17525914 Arabidopsis thaliana
AT2G41980 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17521494-17523493 Arabidopsis thaliana
AT2G41980 5.0kb upstream 5.0kb upstream 7421 true Chr2: 17523494-17530914 Arabidopsis thaliana
AT2G41980 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17525915-17530914 Arabidopsis thaliana
AT2G41980 5.0kb downstream 5.0kb downstream 7421 true Chr2: 17518494-17525914 Arabidopsis thaliana
AT2G41980 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17518494-17523493 Arabidopsis thaliana
AT2G41980 10.0kb upstream 10.0kb upstream 12421 true Chr2: 17523494-17535914 Arabidopsis thaliana
AT2G41980 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17525915-17535914 Arabidopsis thaliana
AT2G41980 10.0kb downstream 10.0kb downstream 12421 true Chr2: 17513494-17525914 Arabidopsis thaliana
AT2G41980 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17513494-17523493 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375440 5261 Brassicaceae View MSA
123800955 5264 Brassicales-Malvales View MSA
124298307 5266 SBM View MSA
124149979 5268 Malvidae View MSA
124072834 5270 Rosid View MSA
123746623 5271 Pentapetalae View MSA
122796827 5272 Eudicot View MSA
122050638 5273 Angiosperm View MSA
121350928 5274 Embryophyte View MSA
123381939 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.847        
cufflinks 4.932        
cufflinks 11.571       High
cufflinks 5.06        
cufflinks 9.272        
cufflinks 4.733        

0 Strain