Gene : AT2G41780 A. thaliana TAIR10
Genomic Order:  3576 Name:  ? AT2G41780
Secondary Identifier:  ? PAC:19642000
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G41780 0.5kb upstream 0.5kb upstream 1215 true Chr2: 17427598-17428812 Arabidopsis thaliana
AT2G41780 0.5kb upstream 0.5kb upstream 500 false Chr2: 17427598-17428097 Arabidopsis thaliana
AT2G41780 0.5kb downstream 0.5kb downstream 1215 true Chr2: 17428098-17429312 Arabidopsis thaliana
AT2G41780 0.5kb downstream 0.5kb downstream 500 false Chr2: 17428813-17429312 Arabidopsis thaliana
AT2G41780 1.0kb upstream 1.0kb upstream 1715 true Chr2: 17427098-17428812 Arabidopsis thaliana
AT2G41780 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17427098-17428097 Arabidopsis thaliana
AT2G41780 1.0kb downstream 1.0kb downstream 1715 true Chr2: 17428098-17429812 Arabidopsis thaliana
AT2G41780 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17428813-17429812 Arabidopsis thaliana
AT2G41780 2.0kb upstream 2.0kb upstream 2715 true Chr2: 17426098-17428812 Arabidopsis thaliana
AT2G41780 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17426098-17428097 Arabidopsis thaliana
AT2G41780 2.0kb downstream 2.0kb downstream 2715 true Chr2: 17428098-17430812 Arabidopsis thaliana
AT2G41780 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17428813-17430812 Arabidopsis thaliana
AT2G41780 5.0kb upstream 5.0kb upstream 5715 true Chr2: 17423098-17428812 Arabidopsis thaliana
AT2G41780 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17423098-17428097 Arabidopsis thaliana
AT2G41780 5.0kb downstream 5.0kb downstream 5715 true Chr2: 17428098-17433812 Arabidopsis thaliana
AT2G41780 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17428813-17433812 Arabidopsis thaliana
AT2G41780 10.0kb upstream 10.0kb upstream 10715 true Chr2: 17418098-17428812 Arabidopsis thaliana
AT2G41780 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17418098-17428097 Arabidopsis thaliana
AT2G41780 10.0kb downstream 10.0kb downstream 10715 true Chr2: 17428098-17438812 Arabidopsis thaliana
AT2G41780 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17428813-17438812 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121493975 5273 Angiosperm Singleton cluster - no MSA
122329491 5261 Brassicaceae Singleton cluster - no MSA
123770795 5264 Brassicales-Malvales Singleton cluster - no MSA
124269330 5266 SBM Singleton cluster - no MSA
124125477 5268 Malvidae Singleton cluster - no MSA
123854450 5270 Rosid Singleton cluster - no MSA
123440468 5271 Pentapetalae Singleton cluster - no MSA
122476055 5272 Eudicot Singleton cluster - no MSA
120767349 5274 Embryophyte Singleton cluster - no MSA
122809746 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.216        
cufflinks 15.353        
cufflinks 0.814       Low
cufflinks 14.055        
cufflinks 1.115        
cufflinks 13.222        

0 Strain