Gene : TPP A. thaliana TAIR10
Primary Identifier:  ? AT2G30440 Defline:  (1 of 3) K03100 - signal peptidase I (lepB)
Genomic Order:  2337 Name:  ? AT2G30440
Secondary Identifier:  ? PAC:19638438
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G30440 0.5kb upstream 0.5kb upstream 3121 true Chr2: 12972377-12975497 Arabidopsis thaliana
AT2G30440 0.5kb upstream 0.5kb upstream 500 false Chr2: 12972377-12972876 Arabidopsis thaliana
AT2G30440 0.5kb downstream 0.5kb downstream 3121 true Chr2: 12972877-12975997 Arabidopsis thaliana
AT2G30440 0.5kb downstream 0.5kb downstream 500 false Chr2: 12975498-12975997 Arabidopsis thaliana
AT2G30440 1.0kb upstream 1.0kb upstream 3621 true Chr2: 12971877-12975497 Arabidopsis thaliana
AT2G30440 1.0kb upstream 1.0kb upstream 1000 false Chr2: 12971877-12972876 Arabidopsis thaliana
AT2G30440 1.0kb downstream 1.0kb downstream 3621 true Chr2: 12972877-12976497 Arabidopsis thaliana
AT2G30440 1.0kb downstream 1.0kb downstream 1000 false Chr2: 12975498-12976497 Arabidopsis thaliana
AT2G30440 2.0kb upstream 2.0kb upstream 4621 true Chr2: 12970877-12975497 Arabidopsis thaliana
AT2G30440 2.0kb upstream 2.0kb upstream 2000 false Chr2: 12970877-12972876 Arabidopsis thaliana
AT2G30440 2.0kb downstream 2.0kb downstream 4621 true Chr2: 12972877-12977497 Arabidopsis thaliana
AT2G30440 2.0kb downstream 2.0kb downstream 2000 false Chr2: 12975498-12977497 Arabidopsis thaliana
AT2G30440 5.0kb upstream 5.0kb upstream 7621 true Chr2: 12967877-12975497 Arabidopsis thaliana
AT2G30440 5.0kb upstream 5.0kb upstream 5000 false Chr2: 12967877-12972876 Arabidopsis thaliana
AT2G30440 5.0kb downstream 5.0kb downstream 7621 true Chr2: 12972877-12980497 Arabidopsis thaliana
AT2G30440 5.0kb downstream 5.0kb downstream 5000 false Chr2: 12975498-12980497 Arabidopsis thaliana
AT2G30440 10.0kb upstream 10.0kb upstream 12621 true Chr2: 12962877-12975497 Arabidopsis thaliana
AT2G30440 10.0kb upstream 10.0kb upstream 10000 false Chr2: 12962877-12972876 Arabidopsis thaliana
AT2G30440 10.0kb downstream 10.0kb downstream 12621 true Chr2: 12972877-12985497 Arabidopsis thaliana
AT2G30440 10.0kb downstream 10.0kb downstream 10000 false Chr2: 12975498-12985497 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377072 5261 Brassicaceae View MSA
123801433 5264 Brassicales-Malvales View MSA
124346815 5266 SBM View MSA
124237216 5268 Malvidae View MSA
124066317 5270 Rosid View MSA
123747244 5271 Pentapetalae View MSA
122789106 5272 Eudicot View MSA
122046589 5273 Angiosperm View MSA
123428894 5275 Viridiplantae View MSA
121348818 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 88.865     High  
cufflinks 72.204     High  
cufflinks 101.688     High  
cufflinks 81.68     High  
cufflinks 113.676     High High
cufflinks 65.695     High Low

0 Strain