Gene : AT2G01540 A. thaliana TAIR10
Defline:  (1 of 3) PTHR23180:SF268 - CALCIUM-DEPENDENT LIPID-BINDING DOMAIN-CONTAINING PROTEIN Genomic Order:  53
Name:  ? AT2G01540 Secondary Identifier:  ? PAC:19638754
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G01540 0.5kb upstream 0.5kb upstream 1871 true Chr2: 242123-243993 Arabidopsis thaliana
AT2G01540 0.5kb upstream 0.5kb upstream 500 false Chr2: 243494-243993 Arabidopsis thaliana
AT2G01540 0.5kb downstream 0.5kb downstream 1871 true Chr2: 241623-243493 Arabidopsis thaliana
AT2G01540 0.5kb downstream 0.5kb downstream 500 false Chr2: 241623-242122 Arabidopsis thaliana
AT2G01540 1.0kb upstream 1.0kb upstream 2371 true Chr2: 242123-244493 Arabidopsis thaliana
AT2G01540 1.0kb upstream 1.0kb upstream 1000 false Chr2: 243494-244493 Arabidopsis thaliana
AT2G01540 1.0kb downstream 1.0kb downstream 2371 true Chr2: 241123-243493 Arabidopsis thaliana
AT2G01540 1.0kb downstream 1.0kb downstream 1000 false Chr2: 241123-242122 Arabidopsis thaliana
AT2G01540 2.0kb upstream 2.0kb upstream 3371 true Chr2: 242123-245493 Arabidopsis thaliana
AT2G01540 2.0kb upstream 2.0kb upstream 2000 false Chr2: 243494-245493 Arabidopsis thaliana
AT2G01540 2.0kb downstream 2.0kb downstream 3371 true Chr2: 240123-243493 Arabidopsis thaliana
AT2G01540 2.0kb downstream 2.0kb downstream 2000 false Chr2: 240123-242122 Arabidopsis thaliana
AT2G01540 5.0kb upstream 5.0kb upstream 6371 true Chr2: 242123-248493 Arabidopsis thaliana
AT2G01540 5.0kb upstream 5.0kb upstream 5000 false Chr2: 243494-248493 Arabidopsis thaliana
AT2G01540 5.0kb downstream 5.0kb downstream 6371 true Chr2: 237123-243493 Arabidopsis thaliana
AT2G01540 5.0kb downstream 5.0kb downstream 5000 false Chr2: 237123-242122 Arabidopsis thaliana
AT2G01540 10.0kb upstream 10.0kb upstream 11371 true Chr2: 242123-253493 Arabidopsis thaliana
AT2G01540 10.0kb upstream 10.0kb upstream 10000 false Chr2: 243494-253493 Arabidopsis thaliana
AT2G01540 10.0kb downstream 10.0kb downstream 11371 true Chr2: 232123-243493 Arabidopsis thaliana
AT2G01540 10.0kb downstream 10.0kb downstream 10000 false Chr2: 232123-242122 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381583 5261 Brassicaceae View MSA
123837188 5264 Brassicales-Malvales View MSA
124341901 5266 SBM View MSA
124249736 5268 Malvidae View MSA
124073070 5270 Rosid View MSA
123750672 5271 Pentapetalae View MSA
122773790 5272 Eudicot View MSA
122048793 5273 Angiosperm View MSA
121311115 5274 Embryophyte View MSA
123348457 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.059        
cufflinks 17.445        
cufflinks 13.146       Low
cufflinks 21.571       High
cufflinks 19.46        
cufflinks 16.434        

0 Strain