Gene : SWA1 A. thaliana TAIR10
Primary Identifier:  ? AT2G47990 Defline:  (1 of 1) K14549 - U3 small nucleolar RNA-associated protein 15 (UTP15)
Genomic Order:  4228 Name:  ? AT2G47990
Secondary Identifier:  ? PAC:19639601
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47990 0.5kb upstream 0.5kb upstream 2312 true Chr2: 19636867-19639178 Arabidopsis thaliana
AT2G47990 0.5kb upstream 0.5kb upstream 500 false Chr2: 19638679-19639178 Arabidopsis thaliana
AT2G47990 0.5kb downstream 0.5kb downstream 2312 true Chr2: 19636367-19638678 Arabidopsis thaliana
AT2G47990 0.5kb downstream 0.5kb downstream 500 false Chr2: 19636367-19636866 Arabidopsis thaliana
AT2G47990 1.0kb upstream 1.0kb upstream 2812 true Chr2: 19636867-19639678 Arabidopsis thaliana
AT2G47990 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19638679-19639678 Arabidopsis thaliana
AT2G47990 1.0kb downstream 1.0kb downstream 2812 true Chr2: 19635867-19638678 Arabidopsis thaliana
AT2G47990 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19635867-19636866 Arabidopsis thaliana
AT2G47990 2.0kb upstream 2.0kb upstream 3812 true Chr2: 19636867-19640678 Arabidopsis thaliana
AT2G47990 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19638679-19640678 Arabidopsis thaliana
AT2G47990 2.0kb downstream 2.0kb downstream 3812 true Chr2: 19634867-19638678 Arabidopsis thaliana
AT2G47990 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19634867-19636866 Arabidopsis thaliana
AT2G47990 5.0kb upstream 5.0kb upstream 6812 true Chr2: 19636867-19643678 Arabidopsis thaliana
AT2G47990 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19638679-19643678 Arabidopsis thaliana
AT2G47990 5.0kb downstream 5.0kb downstream 6812 true Chr2: 19631867-19638678 Arabidopsis thaliana
AT2G47990 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19631867-19636866 Arabidopsis thaliana
AT2G47990 10.0kb upstream 10.0kb upstream 11812 true Chr2: 19636867-19648678 Arabidopsis thaliana
AT2G47990 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19638679-19648678 Arabidopsis thaliana
AT2G47990 10.0kb downstream 10.0kb downstream 11812 true Chr2: 19626867-19638678 Arabidopsis thaliana
AT2G47990 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19626867-19636866 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041129 5273 Angiosperm View MSA
122372031 5261 Brassicaceae View MSA
123833226 5264 Brassicales-Malvales View MSA
124340267 5266 SBM View MSA
124250528 5268 Malvidae View MSA
124066406 5270 Rosid View MSA
123738501 5271 Pentapetalae View MSA
122791518 5272 Eudicot View MSA
121344745 5274 Embryophyte View MSA
123424806 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.999        
cufflinks 10.88        
cufflinks 7.275        
cufflinks 12.756        
cufflinks 6.659       Low
cufflinks 14.326       High

0 Strain