Gene : AT2G47880 A. thaliana TAIR10
Defline:  (1 of 4) PTHR10168//PTHR10168:SF57 - GLUTAREDOXIN // GLUTAREDOXIN-C13-RELATED Genomic Order:  4217
Name:  ? AT2G47880 Secondary Identifier:  ? PAC:19639441
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana THIOREDOX-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47880 0.5kb upstream 0.5kb upstream 1132 true Chr2: 19604540-19605671 Arabidopsis thaliana
AT2G47880 0.5kb upstream 0.5kb upstream 500 false Chr2: 19604540-19605039 Arabidopsis thaliana
AT2G47880 0.5kb downstream 0.5kb downstream 1132 true Chr2: 19605040-19606171 Arabidopsis thaliana
AT2G47880 0.5kb downstream 0.5kb downstream 500 false Chr2: 19605672-19606171 Arabidopsis thaliana
AT2G47880 1.0kb upstream 1.0kb upstream 1632 true Chr2: 19604040-19605671 Arabidopsis thaliana
AT2G47880 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19604040-19605039 Arabidopsis thaliana
AT2G47880 1.0kb downstream 1.0kb downstream 1632 true Chr2: 19605040-19606671 Arabidopsis thaliana
AT2G47880 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19605672-19606671 Arabidopsis thaliana
AT2G47880 2.0kb upstream 2.0kb upstream 2632 true Chr2: 19603040-19605671 Arabidopsis thaliana
AT2G47880 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19603040-19605039 Arabidopsis thaliana
AT2G47880 2.0kb downstream 2.0kb downstream 2632 true Chr2: 19605040-19607671 Arabidopsis thaliana
AT2G47880 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19605672-19607671 Arabidopsis thaliana
AT2G47880 5.0kb upstream 5.0kb upstream 5632 true Chr2: 19600040-19605671 Arabidopsis thaliana
AT2G47880 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19600040-19605039 Arabidopsis thaliana
AT2G47880 5.0kb downstream 5.0kb downstream 5632 true Chr2: 19605040-19610671 Arabidopsis thaliana
AT2G47880 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19605672-19610671 Arabidopsis thaliana
AT2G47880 10.0kb upstream 10.0kb upstream 10632 true Chr2: 19595040-19605671 Arabidopsis thaliana
AT2G47880 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19595040-19605039 Arabidopsis thaliana
AT2G47880 10.0kb downstream 10.0kb downstream 10632 true Chr2: 19605040-19615671 Arabidopsis thaliana
AT2G47880 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19605672-19615671 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028026 5273 Angiosperm View MSA
122372201 5261 Brassicaceae View MSA
123839290 5264 Brassicales-Malvales View MSA
124342010 5266 SBM View MSA
124253588 5268 Malvidae View MSA
124060957 5270 Rosid View MSA
123747538 5271 Pentapetalae View MSA
122788985 5272 Eudicot View MSA
121297578 5274 Embryophyte View MSA
123335620 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.855        
cufflinks 0.072     Low  
cufflinks 19.017        
cufflinks 0.109     Low  
cufflinks 27.036     High  
cufflinks 0.048     Low Low

0 Strain