Gene : AT2G47860 A. thaliana TAIR10
Defline:  (1 of 2) PTHR32370:SF30 - BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 Genomic Order:  4215
Name:  ? AT2G47860 Secondary Identifier:  ? PAC:19641544
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47860 0.5kb upstream 0.5kb upstream 2745 true Chr2: 19599448-19602192 Arabidopsis thaliana
AT2G47860 0.5kb upstream 0.5kb upstream 500 false Chr2: 19599448-19599947 Arabidopsis thaliana
AT2G47860 0.5kb downstream 0.5kb downstream 2745 true Chr2: 19599948-19602692 Arabidopsis thaliana
AT2G47860 0.5kb downstream 0.5kb downstream 500 false Chr2: 19602193-19602692 Arabidopsis thaliana
AT2G47860 1.0kb upstream 1.0kb upstream 3245 true Chr2: 19598948-19602192 Arabidopsis thaliana
AT2G47860 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19598948-19599947 Arabidopsis thaliana
AT2G47860 1.0kb downstream 1.0kb downstream 3245 true Chr2: 19599948-19603192 Arabidopsis thaliana
AT2G47860 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19602193-19603192 Arabidopsis thaliana
AT2G47860 2.0kb upstream 2.0kb upstream 4245 true Chr2: 19597948-19602192 Arabidopsis thaliana
AT2G47860 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19597948-19599947 Arabidopsis thaliana
AT2G47860 2.0kb downstream 2.0kb downstream 4245 true Chr2: 19599948-19604192 Arabidopsis thaliana
AT2G47860 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19602193-19604192 Arabidopsis thaliana
AT2G47860 5.0kb upstream 5.0kb upstream 7245 true Chr2: 19594948-19602192 Arabidopsis thaliana
AT2G47860 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19594948-19599947 Arabidopsis thaliana
AT2G47860 5.0kb downstream 5.0kb downstream 7245 true Chr2: 19599948-19607192 Arabidopsis thaliana
AT2G47860 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19602193-19607192 Arabidopsis thaliana
AT2G47860 10.0kb upstream 10.0kb upstream 12245 true Chr2: 19589948-19602192 Arabidopsis thaliana
AT2G47860 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19589948-19599947 Arabidopsis thaliana
AT2G47860 10.0kb downstream 10.0kb downstream 12245 true Chr2: 19599948-19612192 Arabidopsis thaliana
AT2G47860 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19602193-19612192 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373299 5261 Brassicaceae View MSA
123800528 5264 Brassicales-Malvales View MSA
124297935 5266 SBM View MSA
124149703 5268 Malvidae View MSA
123875455 5270 Rosid View MSA
123459270 5271 Pentapetalae View MSA
122494664 5272 Eudicot View MSA
122042362 5273 Angiosperm View MSA
121350656 5274 Embryophyte View MSA
123381839 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.353        
cufflinks 7.835        
cufflinks 0.26     Low  
cufflinks 6.817        
cufflinks 0.197     Low Low
cufflinks 8.152        

0 Strain