Gene : AT2G47800 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24223//PTHR24223:SF246 - FAMILY NOT NAMED // ABC TRANSPORTER C FAMILY MEMBER 14-RELATED Genomic Order:  4208
Name:  ? AT2G47800 Secondary Identifier:  ? PAC:19642410
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47800 0.5kb upstream 0.5kb upstream 6236 true Chr2: 19574364-19580599 Arabidopsis thaliana
AT2G47800 0.5kb upstream 0.5kb upstream 500 false Chr2: 19574364-19574863 Arabidopsis thaliana
AT2G47800 0.5kb downstream 0.5kb downstream 6236 true Chr2: 19574864-19581099 Arabidopsis thaliana
AT2G47800 0.5kb downstream 0.5kb downstream 500 false Chr2: 19580600-19581099 Arabidopsis thaliana
AT2G47800 1.0kb upstream 1.0kb upstream 6736 true Chr2: 19573864-19580599 Arabidopsis thaliana
AT2G47800 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19573864-19574863 Arabidopsis thaliana
AT2G47800 1.0kb downstream 1.0kb downstream 6736 true Chr2: 19574864-19581599 Arabidopsis thaliana
AT2G47800 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19580600-19581599 Arabidopsis thaliana
AT2G47800 2.0kb upstream 2.0kb upstream 7736 true Chr2: 19572864-19580599 Arabidopsis thaliana
AT2G47800 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19572864-19574863 Arabidopsis thaliana
AT2G47800 2.0kb downstream 2.0kb downstream 7736 true Chr2: 19574864-19582599 Arabidopsis thaliana
AT2G47800 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19580600-19582599 Arabidopsis thaliana
AT2G47800 5.0kb upstream 5.0kb upstream 10736 true Chr2: 19569864-19580599 Arabidopsis thaliana
AT2G47800 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19569864-19574863 Arabidopsis thaliana
AT2G47800 5.0kb downstream 5.0kb downstream 10736 true Chr2: 19574864-19585599 Arabidopsis thaliana
AT2G47800 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19580600-19585599 Arabidopsis thaliana
AT2G47800 10.0kb upstream 10.0kb upstream 15736 true Chr2: 19564864-19580599 Arabidopsis thaliana
AT2G47800 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19564864-19574863 Arabidopsis thaliana
AT2G47800 10.0kb downstream 10.0kb downstream 15736 true Chr2: 19574864-19590599 Arabidopsis thaliana
AT2G47800 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19580600-19590599 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369800 5261 Brassicaceae View MSA
123832155 5264 Brassicales-Malvales View MSA
124347363 5266 SBM View MSA
124240913 5268 Malvidae View MSA
124064562 5270 Rosid View MSA
123749695 5271 Pentapetalae View MSA
122792378 5272 Eudicot View MSA
122046168 5273 Angiosperm View MSA
123429075 5275 Viridiplantae View MSA
121351607 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.61       High
cufflinks 10.856        
cufflinks 10.725        
cufflinks 14.154        
cufflinks 8.806       Low
cufflinks 16.321        

0 Strain