Gene : AT2G47780 A. thaliana TAIR10
Defline:  (1 of 3) PF05755 - Rubber elongation factor protein (REF) (REF) Genomic Order:  4206
Name:  ? AT2G47780 Secondary Identifier:  ? PAC:19643134
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47780 0.5kb upstream 0.5kb upstream 1486 true Chr2: 19569549-19571034 Arabidopsis thaliana
AT2G47780 0.5kb upstream 0.5kb upstream 500 false Chr2: 19569549-19570048 Arabidopsis thaliana
AT2G47780 0.5kb downstream 0.5kb downstream 1486 true Chr2: 19570049-19571534 Arabidopsis thaliana
AT2G47780 0.5kb downstream 0.5kb downstream 500 false Chr2: 19571035-19571534 Arabidopsis thaliana
AT2G47780 1.0kb upstream 1.0kb upstream 1986 true Chr2: 19569049-19571034 Arabidopsis thaliana
AT2G47780 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19569049-19570048 Arabidopsis thaliana
AT2G47780 1.0kb downstream 1.0kb downstream 1986 true Chr2: 19570049-19572034 Arabidopsis thaliana
AT2G47780 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19571035-19572034 Arabidopsis thaliana
AT2G47780 2.0kb upstream 2.0kb upstream 2986 true Chr2: 19568049-19571034 Arabidopsis thaliana
AT2G47780 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19568049-19570048 Arabidopsis thaliana
AT2G47780 2.0kb downstream 2.0kb downstream 2986 true Chr2: 19570049-19573034 Arabidopsis thaliana
AT2G47780 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19571035-19573034 Arabidopsis thaliana
AT2G47780 5.0kb upstream 5.0kb upstream 5986 true Chr2: 19565049-19571034 Arabidopsis thaliana
AT2G47780 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19565049-19570048 Arabidopsis thaliana
AT2G47780 5.0kb downstream 5.0kb downstream 5986 true Chr2: 19570049-19576034 Arabidopsis thaliana
AT2G47780 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19571035-19576034 Arabidopsis thaliana
AT2G47780 10.0kb upstream 10.0kb upstream 10986 true Chr2: 19560049-19571034 Arabidopsis thaliana
AT2G47780 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19560049-19570048 Arabidopsis thaliana
AT2G47780 10.0kb downstream 10.0kb downstream 10986 true Chr2: 19570049-19581034 Arabidopsis thaliana
AT2G47780 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19571035-19581034 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370324 5261 Brassicaceae View MSA
123831421 5264 Brassicales-Malvales View MSA
124343502 5266 SBM View MSA
124244852 5268 Malvidae View MSA
124071747 5270 Rosid View MSA
123747287 5271 Pentapetalae View MSA
122790209 5272 Eudicot View MSA
122043264 5273 Angiosperm View MSA
121343982 5274 Embryophyte View MSA
123379951 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.617        
cufflinks 7.372        
cufflinks 1.026        
cufflinks 15.607       High
cufflinks 0.722       Low
cufflinks 11.938        

0 Strain