Gene : AT2G47440 A. thaliana TAIR10
Defline:  (1 of 4) PTHR22904//PTHR22904:SF7 - TPR REPEAT CONTAINING PROTEIN // T14P4.7 PROTEIN Genomic Order:  4172
Name:  ? AT2G47440 Secondary Identifier:  ? PAC:19638607
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47440 0.5kb upstream 0.5kb upstream 2668 true Chr2: 19469219-19471886 Arabidopsis thaliana
AT2G47440 0.5kb upstream 0.5kb upstream 500 false Chr2: 19469219-19469718 Arabidopsis thaliana
AT2G47440 0.5kb downstream 0.5kb downstream 2668 true Chr2: 19469719-19472386 Arabidopsis thaliana
AT2G47440 0.5kb downstream 0.5kb downstream 500 false Chr2: 19471887-19472386 Arabidopsis thaliana
AT2G47440 1.0kb upstream 1.0kb upstream 3168 true Chr2: 19468719-19471886 Arabidopsis thaliana
AT2G47440 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19468719-19469718 Arabidopsis thaliana
AT2G47440 1.0kb downstream 1.0kb downstream 3168 true Chr2: 19469719-19472886 Arabidopsis thaliana
AT2G47440 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19471887-19472886 Arabidopsis thaliana
AT2G47440 2.0kb upstream 2.0kb upstream 4168 true Chr2: 19467719-19471886 Arabidopsis thaliana
AT2G47440 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19467719-19469718 Arabidopsis thaliana
AT2G47440 2.0kb downstream 2.0kb downstream 4168 true Chr2: 19469719-19473886 Arabidopsis thaliana
AT2G47440 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19471887-19473886 Arabidopsis thaliana
AT2G47440 5.0kb upstream 5.0kb upstream 7168 true Chr2: 19464719-19471886 Arabidopsis thaliana
AT2G47440 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19464719-19469718 Arabidopsis thaliana
AT2G47440 5.0kb downstream 5.0kb downstream 7168 true Chr2: 19469719-19476886 Arabidopsis thaliana
AT2G47440 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19471887-19476886 Arabidopsis thaliana
AT2G47440 10.0kb upstream 10.0kb upstream 12168 true Chr2: 19459719-19471886 Arabidopsis thaliana
AT2G47440 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19459719-19469718 Arabidopsis thaliana
AT2G47440 10.0kb downstream 10.0kb downstream 12168 true Chr2: 19469719-19481886 Arabidopsis thaliana
AT2G47440 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19471887-19481886 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041142 5273 Angiosperm View MSA
122366873 5261 Brassicaceae View MSA
123836668 5264 Brassicales-Malvales View MSA
124346443 5266 SBM View MSA
124249901 5268 Malvidae View MSA
124062963 5270 Rosid View MSA
123751369 5271 Pentapetalae View MSA
122797841 5272 Eudicot View MSA
121309802 5274 Embryophyte View MSA
123347457 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 58.277     High High
cufflinks 32.8     High  
cufflinks 48.932     High  
cufflinks 26.186       Low
cufflinks 44.37     High  
cufflinks 31.581     High  

0 Strain