Gene : CP12-1 A. thaliana TAIR10
Primary Identifier:  ? AT2G47400 Defline:  (1 of 2) PTHR33921//PTHR33921:SF2 - FAMILY NOT NAMED // CALVIN CYCLE PROTEIN CP12-1, CHLOROPLASTIC-RELATED
Genomic Order:  4168 Name:  ? AT2G47400
Secondary Identifier:  ? PAC:19638494
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G47400 0.5kb upstream 0.5kb upstream 1085 true Chr2: 19446354-19447438 Arabidopsis thaliana
AT2G47400 0.5kb upstream 0.5kb upstream 500 false Chr2: 19446354-19446853 Arabidopsis thaliana
AT2G47400 0.5kb downstream 0.5kb downstream 1085 true Chr2: 19446854-19447938 Arabidopsis thaliana
AT2G47400 0.5kb downstream 0.5kb downstream 500 false Chr2: 19447439-19447938 Arabidopsis thaliana
AT2G47400 1.0kb upstream 1.0kb upstream 1585 true Chr2: 19445854-19447438 Arabidopsis thaliana
AT2G47400 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19445854-19446853 Arabidopsis thaliana
AT2G47400 1.0kb downstream 1.0kb downstream 1585 true Chr2: 19446854-19448438 Arabidopsis thaliana
AT2G47400 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19447439-19448438 Arabidopsis thaliana
AT2G47400 2.0kb upstream 2.0kb upstream 2585 true Chr2: 19444854-19447438 Arabidopsis thaliana
AT2G47400 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19444854-19446853 Arabidopsis thaliana
AT2G47400 2.0kb downstream 2.0kb downstream 2585 true Chr2: 19446854-19449438 Arabidopsis thaliana
AT2G47400 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19447439-19449438 Arabidopsis thaliana
AT2G47400 5.0kb upstream 5.0kb upstream 5585 true Chr2: 19441854-19447438 Arabidopsis thaliana
AT2G47400 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19441854-19446853 Arabidopsis thaliana
AT2G47400 5.0kb downstream 5.0kb downstream 5585 true Chr2: 19446854-19452438 Arabidopsis thaliana
AT2G47400 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19447439-19452438 Arabidopsis thaliana
AT2G47400 10.0kb upstream 10.0kb upstream 10585 true Chr2: 19436854-19447438 Arabidopsis thaliana
AT2G47400 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19436854-19446853 Arabidopsis thaliana
AT2G47400 10.0kb downstream 10.0kb downstream 10585 true Chr2: 19446854-19457438 Arabidopsis thaliana
AT2G47400 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19447439-19457438 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377539 5261 Brassicaceae View MSA
123841379 5264 Brassicales-Malvales View MSA
124347812 5266 SBM View MSA
124254040 5268 Malvidae View MSA
124070241 5270 Rosid View MSA
123742696 5271 Pentapetalae View MSA
122795504 5272 Eudicot View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 911.726     High  
cufflinks 35.048     High  
cufflinks 1055.61     High  
cufflinks 29.061        
cufflinks 993.403     High  
cufflinks 8.972       Low

0 Strain