Gene : AT2G46550 A. thaliana TAIR10
Defline:  (1 of 2) PTHR33868:SF2 - EXPRESSED PROTEIN Genomic Order:  4080
Name:  ? AT2G46550 Secondary Identifier:  ? PAC:19641045
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G46550 0.5kb upstream 0.5kb upstream 2739 true Chr2: 19111989-19114727 Arabidopsis thaliana
AT2G46550 0.5kb upstream 0.5kb upstream 500 false Chr2: 19114228-19114727 Arabidopsis thaliana
AT2G46550 0.5kb downstream 0.5kb downstream 2739 true Chr2: 19111489-19114227 Arabidopsis thaliana
AT2G46550 0.5kb downstream 0.5kb downstream 500 false Chr2: 19111489-19111988 Arabidopsis thaliana
AT2G46550 1.0kb upstream 1.0kb upstream 3239 true Chr2: 19111989-19115227 Arabidopsis thaliana
AT2G46550 1.0kb upstream 1.0kb upstream 1000 false Chr2: 19114228-19115227 Arabidopsis thaliana
AT2G46550 1.0kb downstream 1.0kb downstream 3239 true Chr2: 19110989-19114227 Arabidopsis thaliana
AT2G46550 1.0kb downstream 1.0kb downstream 1000 false Chr2: 19110989-19111988 Arabidopsis thaliana
AT2G46550 2.0kb upstream 2.0kb upstream 4239 true Chr2: 19111989-19116227 Arabidopsis thaliana
AT2G46550 2.0kb upstream 2.0kb upstream 2000 false Chr2: 19114228-19116227 Arabidopsis thaliana
AT2G46550 2.0kb downstream 2.0kb downstream 4239 true Chr2: 19109989-19114227 Arabidopsis thaliana
AT2G46550 2.0kb downstream 2.0kb downstream 2000 false Chr2: 19109989-19111988 Arabidopsis thaliana
AT2G46550 5.0kb upstream 5.0kb upstream 7239 true Chr2: 19111989-19119227 Arabidopsis thaliana
AT2G46550 5.0kb upstream 5.0kb upstream 5000 false Chr2: 19114228-19119227 Arabidopsis thaliana
AT2G46550 5.0kb downstream 5.0kb downstream 7239 true Chr2: 19106989-19114227 Arabidopsis thaliana
AT2G46550 5.0kb downstream 5.0kb downstream 5000 false Chr2: 19106989-19111988 Arabidopsis thaliana
AT2G46550 10.0kb upstream 10.0kb upstream 12239 true Chr2: 19111989-19124227 Arabidopsis thaliana
AT2G46550 10.0kb upstream 10.0kb upstream 10000 false Chr2: 19114228-19124227 Arabidopsis thaliana
AT2G46550 10.0kb downstream 10.0kb downstream 12239 true Chr2: 19101989-19114227 Arabidopsis thaliana
AT2G46550 10.0kb downstream 10.0kb downstream 10000 false Chr2: 19101989-19111988 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362210 5261 Brassicaceae View MSA
123828693 5264 Brassicales-Malvales View MSA
124345501 5266 SBM View MSA
124249341 5268 Malvidae View MSA
124070490 5270 Rosid View MSA
123747466 5271 Pentapetalae View MSA
122788794 5272 Eudicot View MSA
122043778 5273 Angiosperm View MSA
121348592 5274 Embryophyte View MSA
123380930 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.124        
cufflinks 7.31        
cufflinks 28.254     High  
cufflinks 9.154        
cufflinks 35.194     High High
cufflinks 5.658       Low

0 Strain