Gene : KPHMT1 A. thaliana TAIR10
Primary Identifier:  ? AT2G46110 Defline:  (1 of 1) PTHR20881//PTHR20881:SF0 - 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE // 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
Genomic Order:  4029 Name:  ? AT2G46110
Secondary Identifier:  ? PAC:19639382
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PANTO-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G46110 0.5kb upstream 0.5kb upstream 2461 true Chr2: 18954570-18957030 Arabidopsis thaliana
AT2G46110 0.5kb upstream 0.5kb upstream 500 false Chr2: 18956531-18957030 Arabidopsis thaliana
AT2G46110 0.5kb downstream 0.5kb downstream 2461 true Chr2: 18954070-18956530 Arabidopsis thaliana
AT2G46110 0.5kb downstream 0.5kb downstream 500 false Chr2: 18954070-18954569 Arabidopsis thaliana
AT2G46110 1.0kb upstream 1.0kb upstream 2961 true Chr2: 18954570-18957530 Arabidopsis thaliana
AT2G46110 1.0kb upstream 1.0kb upstream 1000 false Chr2: 18956531-18957530 Arabidopsis thaliana
AT2G46110 1.0kb downstream 1.0kb downstream 2961 true Chr2: 18953570-18956530 Arabidopsis thaliana
AT2G46110 1.0kb downstream 1.0kb downstream 1000 false Chr2: 18953570-18954569 Arabidopsis thaliana
AT2G46110 2.0kb upstream 2.0kb upstream 3961 true Chr2: 18954570-18958530 Arabidopsis thaliana
AT2G46110 2.0kb upstream 2.0kb upstream 2000 false Chr2: 18956531-18958530 Arabidopsis thaliana
AT2G46110 2.0kb downstream 2.0kb downstream 3961 true Chr2: 18952570-18956530 Arabidopsis thaliana
AT2G46110 2.0kb downstream 2.0kb downstream 2000 false Chr2: 18952570-18954569 Arabidopsis thaliana
AT2G46110 5.0kb upstream 5.0kb upstream 6961 true Chr2: 18954570-18961530 Arabidopsis thaliana
AT2G46110 5.0kb upstream 5.0kb upstream 5000 false Chr2: 18956531-18961530 Arabidopsis thaliana
AT2G46110 5.0kb downstream 5.0kb downstream 6961 true Chr2: 18949570-18956530 Arabidopsis thaliana
AT2G46110 5.0kb downstream 5.0kb downstream 5000 false Chr2: 18949570-18954569 Arabidopsis thaliana
AT2G46110 10.0kb upstream 10.0kb upstream 11961 true Chr2: 18954570-18966530 Arabidopsis thaliana
AT2G46110 10.0kb upstream 10.0kb upstream 10000 false Chr2: 18956531-18966530 Arabidopsis thaliana
AT2G46110 10.0kb downstream 10.0kb downstream 11961 true Chr2: 18944570-18956530 Arabidopsis thaliana
AT2G46110 10.0kb downstream 10.0kb downstream 10000 false Chr2: 18944570-18954569 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368160 5261 Brassicaceae View MSA
123840931 5264 Brassicales-Malvales View MSA
124337427 5266 SBM View MSA
124240313 5268 Malvidae View MSA
124063716 5270 Rosid View MSA
123736873 5271 Pentapetalae View MSA
122793216 5272 Eudicot View MSA
122047605 5273 Angiosperm View MSA
121346037 5274 Embryophyte View MSA
123424122 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.587       Low
cufflinks 3.852        
cufflinks 5.125       High
cufflinks 3.789        
cufflinks 4.028        
cufflinks 4.573        

0 Strain