Gene : AT2G33490 A. thaliana TAIR10
Defline:  hydroxyproline-rich glycoprotein family protein Genomic Order:  2675
Name:  ? AT2G33490 Secondary Identifier:  ? PAC:19642967
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G33490 0.5kb upstream 0.5kb upstream 4818 true Chr2: 14183052-14187869 Arabidopsis thaliana
AT2G33490 0.5kb upstream 0.5kb upstream 500 false Chr2: 14183052-14183551 Arabidopsis thaliana
AT2G33490 0.5kb downstream 0.5kb downstream 4818 true Chr2: 14183552-14188369 Arabidopsis thaliana
AT2G33490 0.5kb downstream 0.5kb downstream 500 false Chr2: 14187870-14188369 Arabidopsis thaliana
AT2G33490 1.0kb upstream 1.0kb upstream 5318 true Chr2: 14182552-14187869 Arabidopsis thaliana
AT2G33490 1.0kb upstream 1.0kb upstream 1000 false Chr2: 14182552-14183551 Arabidopsis thaliana
AT2G33490 1.0kb downstream 1.0kb downstream 5318 true Chr2: 14183552-14188869 Arabidopsis thaliana
AT2G33490 1.0kb downstream 1.0kb downstream 1000 false Chr2: 14187870-14188869 Arabidopsis thaliana
AT2G33490 2.0kb upstream 2.0kb upstream 6318 true Chr2: 14181552-14187869 Arabidopsis thaliana
AT2G33490 2.0kb upstream 2.0kb upstream 2000 false Chr2: 14181552-14183551 Arabidopsis thaliana
AT2G33490 2.0kb downstream 2.0kb downstream 6318 true Chr2: 14183552-14189869 Arabidopsis thaliana
AT2G33490 2.0kb downstream 2.0kb downstream 2000 false Chr2: 14187870-14189869 Arabidopsis thaliana
AT2G33490 5.0kb upstream 5.0kb upstream 9318 true Chr2: 14178552-14187869 Arabidopsis thaliana
AT2G33490 5.0kb upstream 5.0kb upstream 5000 false Chr2: 14178552-14183551 Arabidopsis thaliana
AT2G33490 5.0kb downstream 5.0kb downstream 9318 true Chr2: 14183552-14192869 Arabidopsis thaliana
AT2G33490 5.0kb downstream 5.0kb downstream 5000 false Chr2: 14187870-14192869 Arabidopsis thaliana
AT2G33490 10.0kb upstream 10.0kb upstream 14318 true Chr2: 14173552-14187869 Arabidopsis thaliana
AT2G33490 10.0kb upstream 10.0kb upstream 10000 false Chr2: 14173552-14183551 Arabidopsis thaliana
AT2G33490 10.0kb downstream 10.0kb downstream 14318 true Chr2: 14183552-14197869 Arabidopsis thaliana
AT2G33490 10.0kb downstream 10.0kb downstream 10000 false Chr2: 14187870-14197869 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368794 5261 Brassicaceae View MSA
123840840 5264 Brassicales-Malvales View MSA
124344886 5266 SBM View MSA
124253060 5268 Malvidae View MSA
124070616 5270 Rosid View MSA
123745722 5271 Pentapetalae View MSA
122786878 5272 Eudicot View MSA
122041909 5273 Angiosperm View MSA
121348701 5274 Embryophyte View MSA
123380980 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.785       High
cufflinks 6.708        
cufflinks 5.274       Low
cufflinks 7.376        
cufflinks 5.861        
cufflinks 6.855        

0 Strain