Gene : CCT1 A. thaliana TAIR10
Primary Identifier:  ? AT2G32260 Defline:  (1 of 2) 2.7.7.15 - Choline-phosphate cytidylyltransferase / Phosphorylcholine transferase
Genomic Order:  2539 Name:  ? AT2G32260
Secondary Identifier:  ? PAC:19641395
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3561 Arabidopsis thaliana pathologic  
Athaliana PWY3O-450 Arabidopsis thaliana pathologic  
Athaliana PWY4FS-2 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G32260 0.5kb upstream 0.5kb upstream 3626 true Chr2: 13697016-13700641 Arabidopsis thaliana
AT2G32260 0.5kb upstream 0.5kb upstream 500 false Chr2: 13697016-13697515 Arabidopsis thaliana
AT2G32260 0.5kb downstream 0.5kb downstream 3626 true Chr2: 13697516-13701141 Arabidopsis thaliana
AT2G32260 0.5kb downstream 0.5kb downstream 500 false Chr2: 13700642-13701141 Arabidopsis thaliana
AT2G32260 1.0kb upstream 1.0kb upstream 4126 true Chr2: 13696516-13700641 Arabidopsis thaliana
AT2G32260 1.0kb upstream 1.0kb upstream 1000 false Chr2: 13696516-13697515 Arabidopsis thaliana
AT2G32260 1.0kb downstream 1.0kb downstream 4126 true Chr2: 13697516-13701641 Arabidopsis thaliana
AT2G32260 1.0kb downstream 1.0kb downstream 1000 false Chr2: 13700642-13701641 Arabidopsis thaliana
AT2G32260 2.0kb upstream 2.0kb upstream 5126 true Chr2: 13695516-13700641 Arabidopsis thaliana
AT2G32260 2.0kb upstream 2.0kb upstream 2000 false Chr2: 13695516-13697515 Arabidopsis thaliana
AT2G32260 2.0kb downstream 2.0kb downstream 5126 true Chr2: 13697516-13702641 Arabidopsis thaliana
AT2G32260 2.0kb downstream 2.0kb downstream 2000 false Chr2: 13700642-13702641 Arabidopsis thaliana
AT2G32260 5.0kb upstream 5.0kb upstream 8126 true Chr2: 13692516-13700641 Arabidopsis thaliana
AT2G32260 5.0kb upstream 5.0kb upstream 5000 false Chr2: 13692516-13697515 Arabidopsis thaliana
AT2G32260 5.0kb downstream 5.0kb downstream 8126 true Chr2: 13697516-13705641 Arabidopsis thaliana
AT2G32260 5.0kb downstream 5.0kb downstream 5000 false Chr2: 13700642-13705641 Arabidopsis thaliana
AT2G32260 10.0kb upstream 10.0kb upstream 13126 true Chr2: 13687516-13700641 Arabidopsis thaliana
AT2G32260 10.0kb upstream 10.0kb upstream 10000 false Chr2: 13687516-13697515 Arabidopsis thaliana
AT2G32260 10.0kb downstream 10.0kb downstream 13126 true Chr2: 13697516-13710641 Arabidopsis thaliana
AT2G32260 10.0kb downstream 10.0kb downstream 10000 false Chr2: 13700642-13710641 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370712 5261 Brassicaceae View MSA
123838726 5264 Brassicales-Malvales View MSA
124345144 5266 SBM View MSA
124245941 5268 Malvidae View MSA
124069985 5270 Rosid View MSA
123749333 5271 Pentapetalae View MSA
122792398 5272 Eudicot View MSA
122047197 5273 Angiosperm View MSA
121348751 5274 Embryophyte View MSA
123428717 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.934        
cufflinks 20.686       High
cufflinks 13.76       Low
cufflinks 20.284        
cufflinks 14.573        
cufflinks 19.108        

0 Strain