Gene : BHLH100 A. thaliana TAIR10
Primary Identifier:  ? AT2G41240 Defline:  (1 of 5) PTHR13935:SF41 - ACHAETE-SCUTE HOMOLOG 3
Genomic Order:  3519 Name:  ? AT2G41240
Secondary Identifier:  ? PAC:19639480
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G41240 0.5kb upstream 0.5kb upstream 1539 true Chr2: 17198282-17199820 Arabidopsis thaliana
AT2G41240 0.5kb upstream 0.5kb upstream 500 false Chr2: 17199321-17199820 Arabidopsis thaliana
AT2G41240 0.5kb downstream 0.5kb downstream 1539 true Chr2: 17197782-17199320 Arabidopsis thaliana
AT2G41240 0.5kb downstream 0.5kb downstream 500 false Chr2: 17197782-17198281 Arabidopsis thaliana
AT2G41240 1.0kb upstream 1.0kb upstream 2039 true Chr2: 17198282-17200320 Arabidopsis thaliana
AT2G41240 1.0kb upstream 1.0kb upstream 1000 false Chr2: 17199321-17200320 Arabidopsis thaliana
AT2G41240 1.0kb downstream 1.0kb downstream 2039 true Chr2: 17197282-17199320 Arabidopsis thaliana
AT2G41240 1.0kb downstream 1.0kb downstream 1000 false Chr2: 17197282-17198281 Arabidopsis thaliana
AT2G41240 2.0kb upstream 2.0kb upstream 3039 true Chr2: 17198282-17201320 Arabidopsis thaliana
AT2G41240 2.0kb upstream 2.0kb upstream 2000 false Chr2: 17199321-17201320 Arabidopsis thaliana
AT2G41240 2.0kb downstream 2.0kb downstream 3039 true Chr2: 17196282-17199320 Arabidopsis thaliana
AT2G41240 2.0kb downstream 2.0kb downstream 2000 false Chr2: 17196282-17198281 Arabidopsis thaliana
AT2G41240 5.0kb upstream 5.0kb upstream 6039 true Chr2: 17198282-17204320 Arabidopsis thaliana
AT2G41240 5.0kb upstream 5.0kb upstream 5000 false Chr2: 17199321-17204320 Arabidopsis thaliana
AT2G41240 5.0kb downstream 5.0kb downstream 6039 true Chr2: 17193282-17199320 Arabidopsis thaliana
AT2G41240 5.0kb downstream 5.0kb downstream 5000 false Chr2: 17193282-17198281 Arabidopsis thaliana
AT2G41240 10.0kb upstream 10.0kb upstream 11039 true Chr2: 17198282-17209320 Arabidopsis thaliana
AT2G41240 10.0kb upstream 10.0kb upstream 10000 false Chr2: 17199321-17209320 Arabidopsis thaliana
AT2G41240 10.0kb downstream 10.0kb downstream 11039 true Chr2: 17188282-17199320 Arabidopsis thaliana
AT2G41240 10.0kb downstream 10.0kb downstream 10000 false Chr2: 17188282-17198281 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377987 5261 Brassicaceae View MSA
123801695 5264 Brassicales-Malvales View MSA
124298970 5266 SBM View MSA
124254233 5268 Malvidae View MSA
124071325 5270 Rosid View MSA
123751421 5271 Pentapetalae View MSA
122790904 5272 Eudicot View MSA
122049440 5273 Angiosperm View MSA
121311403 5274 Embryophyte View MSA
123348704 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.177     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.235     Low  
cufflinks 0.008     Low Low
cufflinks 0.424        
cufflinks 0.039     Low  

0 Strain