Gene : AT2G40110 A. thaliana TAIR10
Defline:  (1 of 3) PTHR13848//PTHR13848:SF5 - FAMILY NOT NAMED // PROTEIN YIPPEE-LIKE Genomic Order:  3388
Name:  ? AT2G40110 Secondary Identifier:  ? PAC:19638893
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40110 0.5kb upstream 0.5kb upstream 2106 true Chr2: 16747440-16749545 Arabidopsis thaliana
AT2G40110 0.5kb upstream 0.5kb upstream 500 false Chr2: 16747440-16747939 Arabidopsis thaliana
AT2G40110 0.5kb downstream 0.5kb downstream 2106 true Chr2: 16747940-16750045 Arabidopsis thaliana
AT2G40110 0.5kb downstream 0.5kb downstream 500 false Chr2: 16749546-16750045 Arabidopsis thaliana
AT2G40110 1.0kb upstream 1.0kb upstream 2606 true Chr2: 16746940-16749545 Arabidopsis thaliana
AT2G40110 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16746940-16747939 Arabidopsis thaliana
AT2G40110 1.0kb downstream 1.0kb downstream 2606 true Chr2: 16747940-16750545 Arabidopsis thaliana
AT2G40110 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16749546-16750545 Arabidopsis thaliana
AT2G40110 2.0kb upstream 2.0kb upstream 3606 true Chr2: 16745940-16749545 Arabidopsis thaliana
AT2G40110 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16745940-16747939 Arabidopsis thaliana
AT2G40110 2.0kb downstream 2.0kb downstream 3606 true Chr2: 16747940-16751545 Arabidopsis thaliana
AT2G40110 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16749546-16751545 Arabidopsis thaliana
AT2G40110 5.0kb upstream 5.0kb upstream 6606 true Chr2: 16742940-16749545 Arabidopsis thaliana
AT2G40110 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16742940-16747939 Arabidopsis thaliana
AT2G40110 5.0kb downstream 5.0kb downstream 6606 true Chr2: 16747940-16754545 Arabidopsis thaliana
AT2G40110 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16749546-16754545 Arabidopsis thaliana
AT2G40110 10.0kb upstream 10.0kb upstream 11606 true Chr2: 16737940-16749545 Arabidopsis thaliana
AT2G40110 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16737940-16747939 Arabidopsis thaliana
AT2G40110 10.0kb downstream 10.0kb downstream 11606 true Chr2: 16747940-16759545 Arabidopsis thaliana
AT2G40110 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16749546-16759545 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367231 5261 Brassicaceae View MSA
123829893 5264 Brassicales-Malvales View MSA
124342881 5266 SBM View MSA
124240799 5268 Malvidae View MSA
124065020 5270 Rosid View MSA
123748773 5271 Pentapetalae View MSA
122791142 5272 Eudicot View MSA
122047992 5273 Angiosperm View MSA
123428914 5275 Viridiplantae View MSA
121350900 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.894        
cufflinks 8.751        
cufflinks 4.382       Low
cufflinks 10.748       High
cufflinks 5.557        
cufflinks 6.747        

0 Strain