Gene : AT2G40060 A. thaliana TAIR10
Defline:  (1 of 1) KOG4031 - Vesicle coat protein clathrin, light chain Genomic Order:  3380
Name:  ? AT2G40060 Secondary Identifier:  ? PAC:19642239
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40060 0.5kb upstream 0.5kb upstream 2202 true Chr2: 16725984-16728185 Arabidopsis thaliana
AT2G40060 0.5kb upstream 0.5kb upstream 500 false Chr2: 16725984-16726483 Arabidopsis thaliana
AT2G40060 0.5kb downstream 0.5kb downstream 2202 true Chr2: 16726484-16728685 Arabidopsis thaliana
AT2G40060 0.5kb downstream 0.5kb downstream 500 false Chr2: 16728186-16728685 Arabidopsis thaliana
AT2G40060 1.0kb upstream 1.0kb upstream 2702 true Chr2: 16725484-16728185 Arabidopsis thaliana
AT2G40060 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16725484-16726483 Arabidopsis thaliana
AT2G40060 1.0kb downstream 1.0kb downstream 2702 true Chr2: 16726484-16729185 Arabidopsis thaliana
AT2G40060 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16728186-16729185 Arabidopsis thaliana
AT2G40060 2.0kb upstream 2.0kb upstream 3702 true Chr2: 16724484-16728185 Arabidopsis thaliana
AT2G40060 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16724484-16726483 Arabidopsis thaliana
AT2G40060 2.0kb downstream 2.0kb downstream 3702 true Chr2: 16726484-16730185 Arabidopsis thaliana
AT2G40060 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16728186-16730185 Arabidopsis thaliana
AT2G40060 5.0kb upstream 5.0kb upstream 6702 true Chr2: 16721484-16728185 Arabidopsis thaliana
AT2G40060 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16721484-16726483 Arabidopsis thaliana
AT2G40060 5.0kb downstream 5.0kb downstream 6702 true Chr2: 16726484-16733185 Arabidopsis thaliana
AT2G40060 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16728186-16733185 Arabidopsis thaliana
AT2G40060 10.0kb upstream 10.0kb upstream 11702 true Chr2: 16716484-16728185 Arabidopsis thaliana
AT2G40060 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16716484-16726483 Arabidopsis thaliana
AT2G40060 10.0kb downstream 10.0kb downstream 11702 true Chr2: 16726484-16738185 Arabidopsis thaliana
AT2G40060 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16728186-16738185 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365910 5261 Brassicaceae View MSA
123830985 5264 Brassicales-Malvales View MSA
124337630 5266 SBM View MSA
124247062 5268 Malvidae View MSA
124069515 5270 Rosid View MSA
123752626 5271 Pentapetalae View MSA
122796141 5272 Eudicot View MSA
122042029 5273 Angiosperm View MSA
121347289 5274 Embryophyte View MSA
123426291 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 55.549     High  
cufflinks 99.023     High  
cufflinks 49.809     High  
cufflinks 94.663     High  
cufflinks 45.941     High Low
cufflinks 111.878     High High

0 Strain