Gene : COI1 A. thaliana TAIR10
Primary Identifier:  ? AT2G39940 Defline:  (1 of 1) K13463 - coronatine-insensitive protein 1 (COI-1)
Genomic Order:  3367 Name:  ? AT2G39940
Secondary Identifier:  ? PAC:19638299
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G39940 0.5kb upstream 0.5kb upstream 3756 true Chr2: 16672493-16676248 Arabidopsis thaliana
AT2G39940 0.5kb upstream 0.5kb upstream 500 false Chr2: 16675749-16676248 Arabidopsis thaliana
AT2G39940 0.5kb downstream 0.5kb downstream 3756 true Chr2: 16671993-16675748 Arabidopsis thaliana
AT2G39940 0.5kb downstream 0.5kb downstream 500 false Chr2: 16671993-16672492 Arabidopsis thaliana
AT2G39940 1.0kb upstream 1.0kb upstream 4256 true Chr2: 16672493-16676748 Arabidopsis thaliana
AT2G39940 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16675749-16676748 Arabidopsis thaliana
AT2G39940 1.0kb downstream 1.0kb downstream 4256 true Chr2: 16671493-16675748 Arabidopsis thaliana
AT2G39940 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16671493-16672492 Arabidopsis thaliana
AT2G39940 2.0kb upstream 2.0kb upstream 5256 true Chr2: 16672493-16677748 Arabidopsis thaliana
AT2G39940 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16675749-16677748 Arabidopsis thaliana
AT2G39940 2.0kb downstream 2.0kb downstream 5256 true Chr2: 16670493-16675748 Arabidopsis thaliana
AT2G39940 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16670493-16672492 Arabidopsis thaliana
AT2G39940 5.0kb upstream 5.0kb upstream 8256 true Chr2: 16672493-16680748 Arabidopsis thaliana
AT2G39940 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16675749-16680748 Arabidopsis thaliana
AT2G39940 5.0kb downstream 5.0kb downstream 8256 true Chr2: 16667493-16675748 Arabidopsis thaliana
AT2G39940 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16667493-16672492 Arabidopsis thaliana
AT2G39940 10.0kb upstream 10.0kb upstream 13256 true Chr2: 16672493-16685748 Arabidopsis thaliana
AT2G39940 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16675749-16685748 Arabidopsis thaliana
AT2G39940 10.0kb downstream 10.0kb downstream 13256 true Chr2: 16662493-16675748 Arabidopsis thaliana
AT2G39940 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16662493-16672492 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361208 5261 Brassicaceae View MSA
123839744 5264 Brassicales-Malvales View MSA
124338151 5266 SBM View MSA
124243466 5268 Malvidae View MSA
124062956 5270 Rosid View MSA
123749708 5271 Pentapetalae View MSA
122790201 5272 Eudicot View MSA
122042626 5273 Angiosperm View MSA
121349676 5274 Embryophyte View MSA
123381396 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.24        
cufflinks 15.074        
cufflinks 11.219        
cufflinks 16.341       High
cufflinks 11.429        
cufflinks 14.012        

0 Strain