Gene : AT2G40200 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12565//PTHR12565:SF181 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  3399
Name:  ? AT2G40200 Secondary Identifier:  ? PAC:19641079
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT2G40200 0.5kb upstream 0.5kb upstream 1493 true Chr2: 16790598-16792090 Arabidopsis thaliana
AT2G40200 0.5kb upstream 0.5kb upstream 500 false Chr2: 16790598-16791097 Arabidopsis thaliana
AT2G40200 0.5kb downstream 0.5kb downstream 1493 true Chr2: 16791098-16792590 Arabidopsis thaliana
AT2G40200 0.5kb downstream 0.5kb downstream 500 false Chr2: 16792091-16792590 Arabidopsis thaliana
AT2G40200 1.0kb upstream 1.0kb upstream 1993 true Chr2: 16790098-16792090 Arabidopsis thaliana
AT2G40200 1.0kb upstream 1.0kb upstream 1000 false Chr2: 16790098-16791097 Arabidopsis thaliana
AT2G40200 1.0kb downstream 1.0kb downstream 1993 true Chr2: 16791098-16793090 Arabidopsis thaliana
AT2G40200 1.0kb downstream 1.0kb downstream 1000 false Chr2: 16792091-16793090 Arabidopsis thaliana
AT2G40200 2.0kb upstream 2.0kb upstream 2993 true Chr2: 16789098-16792090 Arabidopsis thaliana
AT2G40200 2.0kb upstream 2.0kb upstream 2000 false Chr2: 16789098-16791097 Arabidopsis thaliana
AT2G40200 2.0kb downstream 2.0kb downstream 2993 true Chr2: 16791098-16794090 Arabidopsis thaliana
AT2G40200 2.0kb downstream 2.0kb downstream 2000 false Chr2: 16792091-16794090 Arabidopsis thaliana
AT2G40200 5.0kb upstream 5.0kb upstream 5993 true Chr2: 16786098-16792090 Arabidopsis thaliana
AT2G40200 5.0kb upstream 5.0kb upstream 5000 false Chr2: 16786098-16791097 Arabidopsis thaliana
AT2G40200 5.0kb downstream 5.0kb downstream 5993 true Chr2: 16791098-16797090 Arabidopsis thaliana
AT2G40200 5.0kb downstream 5.0kb downstream 5000 false Chr2: 16792091-16797090 Arabidopsis thaliana
AT2G40200 10.0kb upstream 10.0kb upstream 10993 true Chr2: 16781098-16792090 Arabidopsis thaliana
AT2G40200 10.0kb upstream 10.0kb upstream 10000 false Chr2: 16781098-16791097 Arabidopsis thaliana
AT2G40200 10.0kb downstream 10.0kb downstream 10993 true Chr2: 16791098-16802090 Arabidopsis thaliana
AT2G40200 10.0kb downstream 10.0kb downstream 10000 false Chr2: 16792091-16802090 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368425 5261 Brassicaceae View MSA
123834084 5264 Brassicales-Malvales View MSA
124344900 5266 SBM View MSA
124250882 5268 Malvidae View MSA
124063256 5270 Rosid View MSA
123736392 5271 Pentapetalae View MSA
122786016 5272 Eudicot View MSA
122048947 5273 Angiosperm View MSA
121351451 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.455       Low
cufflinks 4.597        
cufflinks 0.611        
cufflinks 5.164       High
cufflinks 0.682        
cufflinks 3.827        

0 Strain